C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008ZW_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs2080 VISTA 9606 11:35486453-36089359
GeneTranscriptPositionBiotype
ENSG00000149090 (PAMR1)
peptidase domain containing associated with muscle regeneration 1 		ENST00000527605 (PAMR1-005) 35432425-35525735 protein_coding
ENST00000529303 (PAMR1-007) 35441648-35525603 protein_coding
ENST00000531219 (PAMR1-006) 35434568-35436225 retained_intron
ENST00000534803 (PAMR1-004) 35451888-35525597 processed_transcript
ENST00000611014 (PAMR1-201) 35431833-35494274 protein_coding
ENST00000615849 (PAMR1-202) 35431831-35526031 protein_coding
ENST00000619888 (PAMR1-001) 35431823-35526031 protein_coding
ENST00000621476 (PAMR1-003) 35432113-35530300 protein_coding
ENST00000622144 (PAMR1-002) 35431823-35525623 protein_coding
ENSG00000166326 (TRIM44)
tripartite motif containing 44 		ENST00000299413 (TRIM44-001) 35662805-35818007 protein_coding
ENST00000532066 (TRIM44-002) 35724256-35806621 processed_transcript
ENSG00000179241 (LDLRAD3)
low density lipoprotein receptor class A domain containing 3 		ENST00000315571 (LDLRAD3-001) 35944078-36232136 protein_coding
ENST00000524419 (LDLRAD3-003) 35943981-36230267 protein_coding
ENST00000528989 (LDLRAD3-002) 35943981-36230267 protein_coding
ENST00000529759 (LDLRAD3-006) 36163299-36227429 processed_transcript
ENST00000532490 (LDLRAD3-004) 35944099-36229313 processed_transcript
ENST00000534091 (LDLRAD3-005) 36109925-36229211 processed_transcript
ENSG00000179431 (FJX1)
four jointed box 1 (Drosophila) 		ENST00000317811 (FJX1-001) 35618419-35620868 protein_coding
ENST00000532914 (FJX1-002) 35619688-35620852 processed_transcript
ENSG00000186082 (KRT18P14)
keratin 18 pseudogene 14 		ENST00000534205 (KRT18P14-001) 35860249-35861498 processed_pseudogene
ENSG00000241228 (RP5-916O11.1)
 ENST00000478433 (RP5-916O11.1-001) 35997226-35997675 processed_pseudogene
ENSG00000254672 (RP5-916O11.3)
 ENST00000529830 (RP5-916O11.3-001) 35967010-35968676 processed_pseudogene
ENSG00000254686 (RP1-276E15.1)
 ENST00000525573 (RP1-276E15.1-001) 35656694-35661339 lincRNA
ENSG00000254919 (RP11-698N11.2)
 ENST00000525363 (RP11-698N11.2-002) 35917667-35918739 antisense
ENST00000531569 (RP11-698N11.2-001) 35915051-35918718 antisense
ENSG00000255256 (RP5-916O11.2)
 ENST00000534594 (RP5-916O11.2-001) 35972428-35989007 sense_intronic
CIL_0008ZW_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs2080 VISTA 10090 2:102019035-102620194
GeneTranscriptPositionBiotype
ENSMUSG00000027188 (Pamr1)
peptidase domain containing associated with muscle regeneration 1 		ENSMUST00000028612 (Pamr1-001) 102550012-102643041 protein_coding
ENSMUST00000139090 (Pamr1-003) 102550070-102558026 processed_transcript
ENSMUST00000143071 (Pamr1-004) 102636025-102640787 retained_intron
ENSMUST00000144333 (Pamr1-002) 102550149-102635648 retained_intron
ENSMUSG00000027189 (Trim44)
tripartite motif-containing 44 		ENSMUST00000102573 (Trim44-001) 102300119-102400900 protein_coding
ENSMUST00000144110 (Trim44-003) 102357443-102407828 protein_coding
ENSMUST00000152929 (Trim44-002) 102304494-102400257 protein_coding
ENSMUSG00000048058 (Ldlrad3)
low density lipoprotein receptor class A domain containing 3 		ENSMUST00000058790 (Ldlrad3-001) 101950203-102186385 protein_coding
ENSMUST00000111222 (Ldlrad3-002) 101950203-102186358 protein_coding
ENSMUST00000127888 (Ldlrad3-003) 102111569-102138119 processed_transcript
ENSMUSG00000075012 (Fjx1)
four jointed box 1 (Drosophila) 		ENSMUST00000099678 (Fjx1-001) 102449366-102452499 protein_coding
ENSMUSG00000081774 (Gm13866)
predicted gene 13866 		ENSMUST00000118901 (Gm13866-001) 102209412-102210379 processed_pseudogene
ENSMUSG00000082328 (Gm13921)
predicted gene 13921 		ENSMUST00000119411 (Gm13921-001) 102174290-102174752 processed_pseudogene
ENSMUSG00000083306 (Gm13868)
predicted gene 13868 		ENSMUST00000122411 (Gm13868-001) 102311914-102312207 processed_pseudogene
ENSMUSG00000085110 (Gm13920)
predicted gene 13920 		ENSMUST00000146134 (Gm13920-001) 102057587-102061430 antisense
ENSMUSG00000085417 (Gm13919)
predicted gene 13919 		ENSMUST00000123891 (Gm13919-002) 102039637-102042255 antisense
ENSMUST00000140238 (Gm13919-001) 102039629-102066725 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008ZW_0001ENSG00000149090ENST00000527605ENST00000529303ENST00000531219ENST00000534803ENST00000611014ENST00000615849ENST00000619888ENST00000621476ENST00000622144ENSG00000166326ENST00000299413ENST00000532066ENSG00000179241ENST00000315571ENST00000524419ENST00000528989ENST00000529759ENST00000532490ENST00000534091ENSG00000179431ENST00000317811ENST00000532914ENSG00000186082ENST00000534205ENSG00000241228ENST00000478433ENSG00000254672ENST00000529830ENSG00000254686ENST00000525573ENSG00000254919ENST00000525363ENST00000531569ENSG00000255256ENST00000534594CIL_0008ZW_0002ENSMUSG00000027188ENSMUST00000028612ENSMUST00000139090ENSMUST00000143071ENSMUST00000144333ENSMUSG00000027189ENSMUST00000102573ENSMUST00000144110ENSMUST00000152929ENSMUSG00000048058ENSMUST00000058790ENSMUST00000111222ENSMUST00000127888ENSMUSG00000075012ENSMUST00000099678ENSMUSG00000081774ENSMUST00000118901ENSMUSG00000082328ENSMUST00000119411ENSMUSG00000083306ENSMUST00000122411ENSMUSG00000085110ENSMUST00000146134ENSMUSG00000085417ENSMUST00000123891ENSMUST00000140238
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008ZW_0001ENSG00000149090ENST00000527605ENST00000529303ENST00000531219ENST00000534803ENST00000611014ENST00000615849ENST00000619888ENST00000621476ENST00000622144ENSG00000166326ENST00000299413ENSG00000179241ENST00000315571ENST00000524419ENST00000528989ENST00000529759ENST00000532490ENSG00000179431ENST00000317811ENST00000532914ENSG00000186082ENST00000534205ENSG00000241228ENST00000478433ENSG00000254672ENST00000529830ENSG00000254686ENST00000525573ENSG00000254919ENST00000525363ENST00000531569ENSG00000255256ENST00000534594CIL_0008ZW_0002ENSMUSG00000027188ENSMUST00000028612ENSMUST00000144333ENSMUSG00000027189ENSMUST00000102573ENSMUST00000144110ENSMUSG00000048058ENSMUST00000058790ENSMUST00000111222ENSMUST00000127888ENSMUSG00000075012ENSMUST00000099678ENSMUSG00000081774ENSMUST00000118901ENSMUSG00000082328ENSMUST00000119411ENSMUSG00000083306ENSMUST00000122411ENSMUSG00000085110ENSMUST00000146134ENSMUSG00000085417ENSMUST00000123891ENSMUST00000140238
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000149090 ENST00000527605 N/A 0.149±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.635±0.00 N/A N/A N/A
ENST00000529303 N/A N/A 2.063±0.00 2.655±0.00 N/A N/A N/A N/A 12.728±0.00 N/A N/A N/A N/A N/A
ENST00000531219 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.745±0.00 N/A N/A N/A N/A
ENST00000534803 N/A 0.316±0.00 N/A 1.482±0.00 1.584±0.00 3.210±0.00 0.591±0.00 N/A 7.660±0.00 0.795±0.00 N/A N/A N/A N/A
ENST00000611014 3.953±0.00 0.163±0.00 N/A 6.850±0.00 3.277±0.00 12.590±0.00 3.496±0.00 1.391±0.52 0.339±0.00 2.553±0.00 1.291±0.00 2.110±1.29 23.861±6.50 1.243±0.00
ENST00000615849 N/A N/A N/A N/A N/A 2.098±1.37 1.069±0.00 N/A N/A N/A 0.321±0.00 N/A N/A 0.591±0.43
ENST00000619888 N/A N/A N/A 1.828±0.00 1.382±0.00 N/A 0.479±0.00 N/A 4.006±0.00 N/A N/A 0.847±0.17 6.068±0.00 N/A
ENST00000621476 N/A N/A 0.536±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000622144 1.912±0.00 N/A N/A 7.024±0.00 1.656±0.81 3.215±1.86 0.923±0.00 0.714±0.45 1.570±0.00 0.377±0.27 N/A 0.455±0.00 13.942±0.67 2.812±0.00
ENSG00000166326 ENST00000299413 2.172±0.00 6.576±0.00 2.236±0.00 12.947±0.00 4.598±1.08 1.861±0.39 1.003±0.00 2.572±0.58 3.285±0.46 1.293±0.67 1.483±1.19 4.481±2.08 5.126±5.61 5.619±0.58
ENST00000532066 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000179241 ENST00000315571 12.602±0.00 4.323±0.00 N/A 5.829±0.00 5.946±0.00 4.164±0.00 1.044±0.00 0.304±0.19 0.507±0.01 2.783±0.00 2.764±0.00 3.446±2.67 0.750±0.31 2.932±2.20
ENST00000524419 N/A N/A N/A 0.287±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.668±0.00
ENST00000528989 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.167±0.00 0.908±0.00 N/A N/A
ENST00000529759 N/A N/A 0.609±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000532490 N/A N/A N/A N/A N/A 1.178±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000534091 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000179431 ENST00000317811 2.603±0.00 3.558±0.00 0.352±0.00 2.965±1.13 1.436±0.70 1.085±0.93 0.466±0.44 1.304±0.94 0.583±0.38 1.602±1.57 0.616±0.07 5.499±4.82 4.847±1.63 0.702±0.38
ENST00000532914 1.245±0.00 0.921±0.00 N/A 1.795±0.00 0.737±0.00 N/A 0.308±0.00 N/A N/A N/A 0.345±0.00 N/A N/A 0.540±0.32
ENSG00000186082 ENST00000534205 0.014±0.00 N/A N/A 0.023±0.00 0.017±0.00 N/A N/A 0.016±0.00 0.014±0.00 0.016±0.00 N/A N/A N/A N/A
ENSG00000241228 ENST00000478433 N/A 0.191±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000254672 ENST00000529830 0.023±0.00 0.024±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000254686 ENST00000525573 N/A N/A N/A N/A N/A N/A 0.076±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000254919 ENST00000525363 0.090±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000531569 N/A N/A N/A 0.200±0.17 0.159±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000255256 ENST00000534594 0.085±0.00 0.183±0.00 N/A 0.101±0.00 0.168±0.00 0.018±0.00 0.113±0.00 0.039±0.00 N/A 0.059±0.04 0.161±0.00 0.094±0.02 N/A 0.075±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027188 ENSMUST00000028612 14.856±5.86 0.630±0.10 26.815±2.34 1.645±0.98 13.794±2.40 8.429±1.78 1.670±0.18 2.472±0.19 1.541±0.71 6.702±1.50 0.613±0.26 8.054±1.89 1.615±1.17 0.387±0.20
ENSMUST00000139090 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143071 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144333 N/A N/A N/A 1.038±0.78 N/A N/A N/A N/A N/A N/A 0.251±0.07 1.543±0.00 0.061±0.00 N/A
ENSMUSG00000027189 ENSMUST00000102573 19.867±2.78 24.890±2.21 21.582±2.36 34.569±2.26 17.968±2.88 4.575±1.25 6.206±0.44 20.721±0.86 9.738±1.89 26.020±1.26 4.903±0.36 29.342±7.95 14.243±3.79 7.053±0.94
ENSMUST00000144110 N/A N/A N/A 295.701±0.00 N/A N/A N/A N/A N/A N/A N/A 170.541±0.00 106.115±10.78 N/A
ENSMUST00000152929 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000048058 ENSMUST00000058790 5.708±0.32 4.022±0.33 3.399±0.35 5.532±3.81 4.029±1.43 10.426±0.89 2.045±0.40 9.452±0.56 2.258±0.40 8.288±0.78 1.442±0.57 7.236±3.63 1.477±0.74 0.863±0.41
ENSMUST00000111222 N/A N/A 0.655±0.00 0.940±0.33 1.028±0.00 N/A N/A N/A 0.322±0.05 N/A 0.501±0.00 2.594±1.36 0.500±0.18 0.083±0.00
ENSMUST00000127888 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.150±0.11
ENSMUSG00000075012 ENSMUST00000099678 2.135±1.22 0.424±0.17 3.642±0.53 20.233±7.27 1.303±0.70 2.707±0.32 0.269±0.07 1.737±0.10 0.345±0.28 2.800±0.10 0.243±0.08 3.978±1.65 0.704±0.53 0.143±0.07
ENSMUSG00000081774 ENSMUST00000118901 N/A N/A 0.008±0.00 0.009±0.00 N/A N/A N/A 0.047±0.00 N/A N/A N/A 0.024±0.00 0.029±0.02 N/A
ENSMUSG00000082328 ENSMUST00000119411 0.122±0.01 N/A 0.157±0.08 0.423±0.29 0.216±0.09 0.395±0.18 0.254±0.00 0.223±0.16 0.980±0.77 0.346±0.05 0.146±0.01 0.332±0.10 0.081±0.00 N/A
ENSMUSG00000083306 ENSMUST00000122411 N/A N/A 0.899±0.00 0.359±0.15 0.825±0.26 N/A N/A 0.320±0.00 0.189±0.11 0.326±0.00 0.301±0.06 1.040±0.23 0.627±0.14 0.888±0.50
ENSMUSG00000085110 ENSMUST00000146134 N/A N/A 0.034±0.00 0.036±0.01 N/A N/A 0.021±0.00 0.048±0.00 0.024±0.01 N/A N/A 0.015±0.00 0.024±0.00 0.026±0.00
ENSMUSG00000085417 ENSMUST00000123891 N/A N/A 0.047±0.00 0.235±0.01 1.379±0.40 0.458±0.00 0.249±0.00 0.375±0.08 0.385±0.31 0.663±0.07 0.121±0.00 0.326±0.31 N/A 0.094±0.00
ENSMUST00000140238 0.439±0.07 0.376±0.10 0.027±0.00 0.098±0.06 0.721±0.51 0.867±0.23 0.062±0.02 0.217±0.07 0.060±0.04 0.767±0.18 0.022±0.01 0.658±0.36 0.036±0.00 0.024±0.01

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