C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cadherin 4, type 1, R-cadherin (retinal)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000614565 CDH4-001 ENSG00000179242 9606 + 20:61252426-61940617 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLungMusclePlacentaTestisENST00000614565
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Lung Muscle Placenta Testis
ENST00000614565 0.020±0.00 0.051±0.00 2.000±1.73 0.059±0.00 0.027±0.00 0.032±0.01 0.060±0.00 0.286±0.00 0.143±0.10 0.144±0.08 0.377±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000693 CIL_000693_0002 CGP 20:61252426-62065810

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005886 IDA plasma membrane
GO:0005887 IEA integral component of plasma membrane
GO:0007155 TAS cell adhesion
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007157 IEA heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules
GO:0007411 IEA axon guidance
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0034329 TAS cell junction assembly
GO:0034332 TAS adherens junction organization
GO:0045216 TAS cell-cell junction organization
GO:0045773 IEA positive regulation of axon extension

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000000314 Cdh4-001 protein_coding Mus_musculus 0 2728
ENSMUST00000108911 Cdh4-002 protein_coding Mus_musculus 0 776
ENSDART00000097934 cdh4-201 protein_coding Danio_rerio 0 654

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