C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: glypican 5
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000179399 GPC5 9606 + 13:91398675-92873682 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000377067 GPC5-001 91398675-92867237 protein_coding
  ENST00000483422 GPC5-002 91725058-91756439 processed_transcript
  ENST00000618283 GPC5-003 92866282-92873682 protein_coding
  ENST00000618596 GPC5-201 91693186-91756424 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000377067ENST00000483422ENST00000618283ENST00000618596
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000377067 N/A 0.004±0.00 3.452±2.50 0.140±0.00 0.143±0.10 0.137±0.00 0.260±0.13 0.096±0.02 0.242±0.00 N/A 0.115±0.06 0.041±0.02 1.453±0.33
ENST00000483422 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.042±0.00 N/A
ENST00000618283 0.045±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000618596 N/A N/A N/A 0.102±0.00 N/A 0.212±0.00 N/A 0.076±0.00 0.476±0.00 0.307±0.24 N/A N/A 5.557±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002EC CIL_0002EC_0001 CGP 13:91398675-94407401

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001523 TAS retinoid metabolic process
GO:0005578 IEA proteinaceous extracellular matrix
GO:0005796 TAS Golgi lumen
GO:0005886 TAS plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0005975 TAS carbohydrate metabolic process
GO:0006024 TAS glycosaminoglycan biosynthetic process
GO:0006027 TAS glycosaminoglycan catabolic process
GO:0007603 TAS phototransduction, visible light
GO:0016020 IEA membrane
GO:0030203 TAS glycosaminoglycan metabolic process
GO:0030204 TAS chondroitin sulfate metabolic process
GO:0031225 IEA anchored component of membrane
GO:0043202 TAS lysosomal lumen
GO:0043395 IEA heparan sulfate proteoglycan binding
GO:0044281 TAS small molecule metabolic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000088858 GPC5 glypican 5 protein_coding Danio_rerio
ENSMUSG00000022112 Gpc5 glypican 5 protein_coding Mus_musculus

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