C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002EC_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000179399-ENSG00000183098 CGP 9606 13:91398675-94407401
GeneTranscriptPositionBiotype
ENSG00000179399 (GPC5)
glypican 5 		ENST00000377067 (GPC5-001) 91398675-92867237 protein_coding
ENST00000483422 (GPC5-002) 91725058-91756439 processed_transcript
ENST00000618283 (GPC5-003) 92866282-92873682 protein_coding
ENST00000618596 (GPC5-201) 91693186-91756424 protein_coding
ENSG00000183098 (GPC6)
glypican 6 		ENST00000377047 (GPC6-001) 93226842-94407401 protein_coding
ENST00000617456 (GPC6-201) 94286348-94403217 protein_coding
ENSG00000224394 (GPC6-AS2)
GPC6 antisense RNA 2 		ENST00000445540 (GPC6-AS2-001) 93818424-93836144 antisense
ENSG00000232885 (GPC5-AS2)
GPC5 antisense RNA 2 		ENST00000417589 (GPC5-AS2-001) 92339794-92340603 antisense
ENSG00000235784 (HNRNPA1P29)
heterogeneous nuclear ribonucleoprotein A1 pseudogene 29 		ENST00000426409 (HNRNPA1P29-001) 93394977-93395855 processed_pseudogene
ENSG00000235984 (GPC5-AS1)
GPC5 antisense RNA 1 		ENST00000419288 (GPC5-AS1-002) 92701389-92721614 antisense
ENST00000451897 (GPC5-AS1-001) 92701389-92719975 antisense
ENSG00000236240 (GPC5-IT1)
GPC5 intronic transcript 1 (non-protein coding) 		ENST00000416664 (GPC5-IT1-001) 92484606-92510094 sense_intronic
ENSG00000236520 (GPC6-AS1)
GPC6 antisense RNA 1 		ENST00000436329 (GPC6-AS1-001) 94154193-94187991 antisense

Homo sapiens Ensembl (GRCh38)

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Structures from Ensembl
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CIL_0002EC_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000022112-ENSMUSG00000058571 CGP 10090 14:115092215-117979529
GeneTranscriptPositionBiotype
ENSMUSG00000022112 (Gpc5)
glypican 5 		ENSMUST00000022707 (Gpc5-201) 115092626-116524437 protein_coding
ENSMUST00000175665 (Gpc5-003) 115092272-115417821 protein_coding
ENSMUST00000176912 (Gpc5-001) 115092250-116525179 protein_coding
ENSMUST00000176993 (Gpc5-002) 115092215-115134210 retained_intron
ENSMUSG00000058571 (Gpc6)
glypican 6 		ENSMUST00000078849 (Gpc6-001) 116925297-117979529 protein_coding
ENSMUST00000088483 (Gpc6-004) 116925430-117976544 protein_coding
ENSMUST00000123239 (Gpc6-003) 116925315-117627198 retained_intron
ENSMUST00000125435 (Gpc6-002) 116925531-117975406 protein_coding
ENSMUSG00000093497 (Gm20713)
predicted gene 20713 		ENSMUST00000176344 (Gm20713-001) 115788144-115871278 processed_transcript
ENSMUSG00000093551 (4930505G20Rik)
RIKEN cDNA 4930505G20 gene 		ENSMUST00000176582 (4930505G20Rik-001) 115396551-115409552 processed_transcript
ENSMUSG00000093589 (Gm18367)
predicted gene, 18367 		ENSMUST00000176139 (Gm18367-001) 115555923-115556522 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002EC_0001ENSG00000179399ENST00000377067ENST00000483422ENST00000618283ENST00000618596ENSG00000183098ENST00000377047ENST00000617456ENSG00000224394ENST00000445540ENSG00000232885ENST00000417589ENSG00000235784ENST00000426409ENSG00000235984ENST00000419288ENST00000451897ENSG00000236240ENST00000416664ENSG00000236520ENST00000436329CIL_0002EC_0002ENSMUSG00000022112ENSMUST00000022707ENSMUST00000175665ENSMUST00000176912ENSMUST00000176993ENSMUSG00000058571ENSMUST00000078849ENSMUST00000088483ENSMUST00000123239ENSMUST00000125435ENSMUSG00000093497ENSMUST00000176344ENSMUSG00000093551ENSMUST00000176582ENSMUSG00000093589ENSMUST00000176139
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002EC_0001ENSG00000179399ENST00000377067ENST00000483422ENST00000618283ENST00000618596ENSG00000183098ENST00000377047ENST00000617456ENSG00000224394ENST00000445540ENSG00000232885ENST00000417589ENSG00000235784ENST00000426409ENSG00000235984ENST00000419288ENST00000451897ENSG00000236240ENST00000416664ENSG00000236520ENST00000436329CIL_0002EC_0002ENSMUSG00000022112ENSMUST00000022707ENSMUST00000175665ENSMUST00000176912ENSMUST00000176993ENSMUSG00000058571ENSMUST00000078849ENSMUST00000088483ENSMUST00000125435ENSMUSG00000093497ENSMUST00000176344ENSMUSG00000093551ENSMUST00000176582ENSMUSG00000093589ENSMUST00000176139
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000179399 ENST00000377067 N/A 0.004±0.00 N/A 3.452±2.50 0.140±0.00 0.143±0.10 0.137±0.00 0.260±0.13 0.096±0.02 0.242±0.00 N/A 0.115±0.06 0.041±0.02 1.453±0.33
ENST00000483422 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.042±0.00 N/A
ENST00000618283 0.045±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000618596 N/A N/A N/A N/A 0.102±0.00 N/A 0.212±0.00 N/A 0.076±0.00 0.476±0.00 0.307±0.24 N/A N/A 5.557±0.00
ENSG00000183098 ENST00000377047 0.976±0.00 1.589±0.00 1.885±0.00 0.829±0.11 2.559±0.49 3.705±1.33 0.475±0.03 4.153±1.13 3.424±0.00 1.887±0.44 0.213±0.17 3.378±1.93 0.282±0.07 1.862±1.48
ENST00000617456 N/A N/A N/A N/A N/A N/A 0.524±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000224394 ENST00000445540 N/A N/A N/A N/A N/A 0.064±0.00 0.064±0.00 N/A N/A N/A N/A N/A N/A 0.152±0.10
ENSG00000232885 ENST00000417589 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.096±0.05
ENSG00000235784 ENST00000426409 N/A 0.013±0.00 N/A 0.042±0.03 0.086±0.00 0.078±0.00 N/A 0.651±0.00 0.443±0.00 0.012±0.00 N/A 0.229±0.20 N/A N/A
ENSG00000235984 ENST00000419288 N/A N/A N/A 0.077±0.00 N/A N/A N/A 0.055±0.00 N/A N/A N/A N/A N/A 0.167±0.03
ENST00000451897 N/A N/A N/A N/A N/A N/A N/A 0.056±0.00 N/A 0.103±0.00 N/A 0.630±0.00 N/A N/A
ENSG00000236240 ENST00000416664 N/A N/A 0.156±0.00 0.040±0.00 N/A N/A 0.201±0.00 N/A N/A N/A N/A N/A N/A 0.442±0.01
ENSG00000236520 ENST00000436329 N/A N/A 0.569±0.00 N/A N/A N/A N/A 0.083±0.00 0.012±0.00 N/A N/A 0.053±0.02 N/A 0.055±0.02
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000022112 ENSMUST00000022707 N/A N/A N/A 4.635±4.40 N/A 0.038±0.00 N/A 0.157±0.02 0.022±0.01 0.025±0.00 N/A 0.051±0.03 0.020±0.00 N/A
ENSMUST00000175665 N/A 1.028±0.24 N/A N/A 0.024±0.00 N/A N/A 0.241±0.06 0.006±0.00 N/A N/A N/A 0.011±0.00 0.053±0.01
ENSMUST00000176912 0.030±0.01 0.691±0.16 0.011±0.00 2.239±2.30 N/A N/A N/A 0.122±0.02 0.010±0.00 N/A N/A 0.019±0.00 0.024±0.00 0.123±0.02
ENSMUST00000176993 N/A 1.232±0.59 N/A N/A 0.030±0.00 0.092±0.00 N/A 0.332±0.31 0.055±0.06 0.034±0.00 N/A 0.082±0.01 0.036±0.00 N/A
ENSMUSG00000058571 ENSMUST00000078849 3.469±0.61 1.919±0.60 13.079±1.56 2.854±1.64 3.898±1.33 1.340±0.16 1.747±0.65 1.892±0.37 1.143±1.00 0.903±0.36 N/A 3.859±2.55 1.094±0.52 0.160±0.07
ENSMUST00000088483 N/A N/A N/A N/A 1.629±0.10 0.656±0.20 N/A N/A N/A 0.449±0.00 N/A N/A 0.326±0.00 N/A
ENSMUST00000123239 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000125435 2.126±0.00 2.102±0.00 N/A N/A 1.500±0.00 0.455±0.06 N/A N/A N/A N/A N/A 0.906±0.00 N/A 0.160±0.07
ENSMUSG00000093497 ENSMUST00000176344 0.125±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000093551 ENSMUST00000176582 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.083±1.37
ENSMUSG00000093589 ENSMUST00000176139 0.082±0.00 N/A N/A 0.057±0.04 N/A 0.332±0.12 N/A 0.080±0.00 N/A N/A N/A 0.796±0.00 N/A N/A

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