C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: glypican 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000377067 GPC5-001 ENSG00000179399 9606 + 13:91398675-92867237 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000377067
Transcript ID Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000377067 0.004±0.00 3.452±2.50 0.140±0.00 0.143±0.10 0.137±0.00 0.260±0.13 0.096±0.02 0.242±0.00 0.115±0.06 0.041±0.02 1.453±0.33

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002EC CIL_0002EC_0001 CGP 13:91398675-94407401

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001523 TAS retinoid metabolic process
GO:0005578 IEA proteinaceous extracellular matrix
GO:0005796 TAS Golgi lumen
GO:0005886 TAS plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0005975 TAS carbohydrate metabolic process
GO:0006024 TAS glycosaminoglycan biosynthetic process
GO:0006027 TAS glycosaminoglycan catabolic process
GO:0007603 TAS phototransduction, visible light
GO:0016020 IEA membrane
GO:0030203 TAS glycosaminoglycan metabolic process
GO:0030204 TAS chondroitin sulfate metabolic process
GO:0031225 IEA anchored component of membrane
GO:0043202 TAS lysosomal lumen
GO:0043395 IEA heparan sulfate proteoglycan binding
GO:0044281 TAS small molecule metabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000176912 Gpc5-001 protein_coding Mus_musculus 0 1844
ENSMUST00000022707 Gpc5-201 protein_coding Mus_musculus 0 1757
ENSMUST00000175665 Gpc5-003 protein_coding Mus_musculus 0 1280
ENSMUST00000176993 Gpc5-002 retained_intron Mus_musculus 0 350

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