C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tRNA selenocysteine 1 associated protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000180098 TRNAU1AP 9606 + 1:28553085-28578545 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000373830 TRNAU1AP-001 28553085-28578545 protein_coding
  ENST00000411406 TRNAU1AP-006 28553097-28554048 processed_transcript
  ENST00000464093 TRNAU1AP-005 28553672-28565502 processed_transcript
  ENST00000464880 TRNAU1AP-007 28553107-28561247 processed_transcript
  ENST00000480930 TRNAU1AP-002 28553099-28577744 processed_transcript
  ENST00000484775 TRNAU1AP-010 28560633-28577775 processed_transcript
  ENST00000491577 TRNAU1AP-004 28553106-28577764 processed_transcript
  ENST00000495215 TRNAU1AP-008 28553247-28567332 processed_transcript
  ENST00000495995 TRNAU1AP-003 28553087-28565790 processed_transcript
  ENST00000497790 TRNAU1AP-009 28553233-28561032 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000373830ENST00000464093ENST00000480930ENST00000484775ENST00000495215
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000373830 1.971±0.00 N/A 1.701±0.00 1.334±0.25 1.865±0.00 0.621±0.39 3.044±0.00 0.741±0.00 N/A 4.524±0.00 2.191±0.41 2.052±0.00
ENST00000464093 N/A N/A N/A N/A N/A N/A N/A 1.211±0.00 N/A N/A N/A N/A
ENST00000480930 3.623±0.00 6.692±0.00 2.942±0.00 6.243±0.00 3.877±0.00 3.182±0.00 3.590±0.00 3.268±0.00 5.314±0.00 6.263±3.45 6.974±2.17 3.829±1.30
ENST00000484775 4.609±0.00 7.966±0.00 2.961±0.00 3.492±0.00 1.722±0.00 1.185±0.59 3.078±2.22 2.021±0.00 4.609±0.00 N/A 4.431±1.21 3.528±0.00
ENST00000495215 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.274±0.00 N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0001514 ISS selenocysteine incorporation
GO:0003676 IEA nucleic acid binding
GO:0005515 IEA protein binding
GO:0005634 ISS nucleus
GO:0005737 IEA cytoplasm
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000036015 TRNAU1AP chromosome 6 open reading frame 52 protein_coding Danio_rerio
ENSMUSG00000028898 Trnau1ap tRNA selenocysteine 1 associated protein 1 protein_coding Mus_musculus

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