C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tRNA selenocysteine 1 associated protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000484775 TRNAU1AP-010 ENSG00000180098 9606 + 1:28560633-28577775 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungPlacentaTestisENST00000484775
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Placenta Testis
ENST00000484775 4.609±0.00 7.966±0.00 2.961±0.00 3.492±0.00 1.722±0.00 1.185±0.59 3.078±2.22 2.021±0.00 4.609±0.00 4.431±1.21 3.528±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000030730 Trnau1ap-001 protein_coding Mus_musculus 0 874
ENSMUST00000147652 Trnau1ap-003 nonsense_mediated_decay Mus_musculus 0 719
ENSMUST00000146166 Trnau1ap-002 retained_intron Mus_musculus 0 719
ENSMUST00000131524 Trnau1ap-008 processed_transcript Mus_musculus 0 608
ENSMUST00000125513 Trnau1ap-009 nonsense_mediated_decay Mus_musculus 0 603
ENSMUST00000137520 Trnau1ap-006 nonsense_mediated_decay Mus_musculus 0 440
ENSMUST00000105962 Trnau1ap-007 protein_coding Mus_musculus 0 411
ENSMUST00000150959 Trnau1ap-011 processed_transcript Mus_musculus 0 294
ENSMUST00000127402 Trnau1ap-012 protein_coding Mus_musculus 0 248
ENSMUST00000116286 Stk40-201 protein_coding Mus_musculus 0.00002 55
ENSMUST00000127092 Stk40-002 processed_transcript Mus_musculus 0.00002 55

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