C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tRNA selenocysteine 1 associated protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000028898 Trnau1ap 10090 - 4:132311763-132329538 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000030730 Trnau1ap-001 132311763-132329538 protein_coding
  ENSMUST00000105960 Trnau1ap-004 132321679-132329538 protein_coding
  ENSMUST00000105962 Trnau1ap-007 132311763-132329489 protein_coding
  ENSMUST00000125513 Trnau1ap-009 132314353-132329538 nonsense_mediated_decay
  ENSMUST00000127402 Trnau1ap-012 132314207-132329414 protein_coding
  ENSMUST00000131524 Trnau1ap-008 132314350-132329482 processed_transcript
  ENSMUST00000137520 Trnau1ap-006 132314313-132329504 nonsense_mediated_decay
  ENSMUST00000141317 Trnau1ap-005 132328109-132329515 retained_intron
  ENSMUST00000144387 Trnau1ap-010 132321201-132325276 retained_intron
  ENSMUST00000146166 Trnau1ap-002 132311765-132329516 retained_intron
  ENSMUST00000147652 Trnau1ap-003 132311865-132329389 nonsense_mediated_decay
  ENSMUST00000150959 Trnau1ap-011 132311849-132329494 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000030730ENSMUST00000131524ENSMUST00000146166ENSMUST00000147652ENSMUST00000150959
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000030730 3.970±1.27 3.081±0.89 2.970±0.77 3.637±0.85 2.702±1.12 3.256±1.23 3.588±0.72 6.042±1.47 3.074±1.11 2.211±0.37 4.383±0.64 6.102±2.61 6.687±2.81 1.928±0.22
ENSMUST00000131524 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.925±0.00 11.821±0.00 N/A N/A
ENSMUST00000146166 2.820±1.26 1.241±0.34 1.094±0.10 1.893±0.58 2.868±0.66 2.191±0.72 0.928±0.23 1.445±0.30 0.883±0.37 1.689±0.50 0.637±0.10 2.842±1.09 1.357±0.30 0.369±0.12
ENSMUST00000147652 1.572±0.00 N/A 1.439±0.00 N/A N/A 2.098±0.26 N/A 2.400±0.57 1.210±0.41 2.119±0.58 0.950±0.06 3.435±0.41 4.159±2.42 0.445±0.02
ENSMUST00000150959 N/A 4.335±1.68 N/A N/A 5.763±2.62 N/A 2.397±0.00 N/A 1.567±0.00 N/A N/A 5.975±0.01 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099N CIL_00099N_0002 VISTA 4:131775516-132379227

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0001514 IDA selenocysteine incorporation
GO:0003676 IEA nucleic acid binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000036015 TRNAU1AP chromosome 6 open reading frame 52 protein_coding Danio_rerio
ENSG00000180098 TRNAU1AP tRNA selenocysteine 1 associated protein 1 protein_coding Homo_sapiens

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