C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tRNA selenocysteine 1 associated protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000373830 TRNAU1AP-001 ENSG00000180098 9606 + 1:28553085-28578545 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartKidneyLiverOvaryPlacentaTestisENST00000373830
Transcript ID Adipose Brain Breast Colon Heart Kidney Liver Ovary Placenta Testis
ENST00000373830 1.971±0.00 1.701±0.00 1.334±0.25 1.865±0.00 0.621±0.39 3.044±0.00 0.741±0.00 4.524±0.00 2.191±0.41 2.052±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0001514 ISS selenocysteine incorporation
GO:0003676 IEA nucleic acid binding
GO:0005515 IEA protein binding
GO:0005634 ISS nucleus
GO:0005737 IEA cytoplasm
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000030730 Trnau1ap-001 protein_coding Mus_musculus 0 1258
ENSMUST00000147652 Trnau1ap-003 nonsense_mediated_decay Mus_musculus 0 891
ENSMUST00000146166 Trnau1ap-002 retained_intron Mus_musculus 0 891
ENSMUST00000105962 Trnau1ap-007 protein_coding Mus_musculus 0 623
ENSMUST00000131524 Trnau1ap-008 processed_transcript Mus_musculus 0 608
ENSMUST00000125513 Trnau1ap-009 nonsense_mediated_decay Mus_musculus 0 603
ENSMUST00000150959 Trnau1ap-011 processed_transcript Mus_musculus 0 466
ENSMUST00000137520 Trnau1ap-006 nonsense_mediated_decay Mus_musculus 0 440
ENSMUST00000127402 Trnau1ap-012 protein_coding Mus_musculus 0 433
ENSMUST00000141317 Trnau1ap-005 retained_intron Mus_musculus 0 219

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