C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: polycomb group ring finger 5
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000180628 PCGF5 9606 + 10:91163012-91284331 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000336126 PCGF5-001 91220788-91284331 protein_coding
  ENST00000490164 PCGF5-002 91220783-91227960 processed_transcript
  ENST00000496708 PCGF5-003 91220177-91222929 processed_transcript
  ENST00000543648 PCGF5-201 91220151-91284329 protein_coding
  ENST00000614189 PCGF5-202 91163012-91284329 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000336126ENST00000490164ENST00000543648ENST00000614189
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000336126 5.140±0.00 1.347±0.00 N/A N/A 1.856±0.00 N/A 3.047±0.00 1.510±0.00 N/A 1.601±0.00 N/A 2.127±0.28 1.524±0.33 5.389±2.11
ENST00000490164 N/A 10.999±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 5.596±0.00 5.004±0.26 8.482±4.07 N/A
ENST00000543648 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.038±0.00
ENST00000614189 1.458±0.00 4.146±0.00 2.124±0.00 9.198±3.12 3.488±0.41 7.229±1.65 4.375±2.01 6.272±1.62 5.620±1.56 5.029±3.44 4.901±3.77 2.745±1.00 2.539±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008BY CIL_0008BY_0001 VISTA 10:90630264-91230917
CIL_0001IQ CIL_0001IQ_0001 CGP 10:90912096-91284331
CIL_00018O CIL_00018O_0001 CGP 10:91163012-91514829

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0005813 IDA centrosome
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0031519 IDA PcG protein complex
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000052388 pcgf5b polycomb group ring finger 5b protein_coding Danio_rerio
ENSDARG00000071007 pcgf5a polycomb group ring finger 5a protein_coding Danio_rerio
ENSMUSG00000024805 Pcgf5 polycomb group ring finger 5 protein_coding Mus_musculus

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