C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CUE domain containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000407144 CUEDC1-013 ENSG00000180891 9606 - 17:57862696-57892688 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastHeartKidneyLiverLungMuscleENST00000407144
Transcript ID Adipose Breast Heart Kidney Liver Lung Muscle
ENST00000407144 3.458±0.00 4.646±0.00 6.464±0.00 3.020±0.00 0.815±0.00 2.865±0.00 3.786±2.85

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007PL CIL_0007PL_0001 UCNEbase 17:57406597-58005077
CIL_0009DM CIL_0009DM_0001 VISTA 17:57461902-58063720
CIL_0009DL CIL_0009DL_0001 VISTA 17:57574410-58175690
CIL_0004WX CIL_0004WX_0002 CGP 17:57861243-57988259

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000184231 AL593853.2-201 protein_coding Mus_musculus 0 1230
ENSMUST00000018522 Cuedc1-001 protein_coding Mus_musculus 0 1230
ENSMUST00000154812 Cuedc1-002 nonsense_mediated_decay Mus_musculus 0 1160
ENSMUST00000133149 Cuedc1-003 retained_intron Mus_musculus 0 835
ENSMUST00000125297 Cuedc1-006 retained_intron Mus_musculus 0 316
ENSMUST00000142564 Cuedc1-004 processed_transcript Mus_musculus 0 261

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