C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: rabphilin 3A-like (without C2 domains)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000181031 RPH3AL 9606 - 17:212389-386254 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000323434 RPH3AL-002 212502-353097 protein_coding
  ENST00000331302 RPH3AL-001 212502-352807 protein_coding
  ENST00000536489 RPH3AL-003 213645-352842 protein_coding
  ENST00000570638 RPH3AL-011 247267-339111 protein_coding
  ENST00000570893 RPH3AL-019 213824-247687 processed_transcript
  ENST00000570954 RPH3AL-017 219697-306681 processed_transcript
  ENST00000572075 RPH3AL-020 213804-234585 processed_transcript
  ENST00000572866 RPH3AL-007 348910-352801 processed_transcript
  ENST00000572965 RPH3AL-022 213324-215933 retained_intron
  ENST00000573448 RPH3AL-013 321380-338873 protein_coding
  ENST00000573588 RPH3AL-015 319522-334066 protein_coding
  ENST00000573780 RPH3AL-006 281769-386254 protein_coding
  ENST00000574011 RPH3AL-014 333206-336022 processed_transcript
  ENST00000574722 RPH3AL-016 247191-331027 protein_coding
  ENST00000574953 RPH3AL-018 261689-327531 protein_coding
  ENST00000575130 RPH3AL-005 319441-386233 protein_coding
  ENST00000575634 RPH3AL-009 319507-341423 protein_coding
  ENST00000575736 RPH3AL-010 281828-339659 protein_coding
  ENST00000576001 RPH3AL-021 214702-319480 processed_transcript
  ENST00000576420 RPH3AL-012 247120-339045 protein_coding
  ENST00000577079 RPH3AL-008 247144-352790 protein_coding
  ENST00000618002 RPH3AL-201 212389-352842 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENST00000331302ENST00000536489ENST00000570638ENST00000570893ENST00000572965ENST00000573588ENST00000573780ENST00000574953ENST00000575130ENST00000575736ENST00000576001ENST00000576420ENST00000618002
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENST00000331302 2.715±0.00 1.738±0.00 N/A N/A N/A N/A 0.782±0.00 4.446±0.00 5.899±0.00 0.792±0.00 2.417±0.71 2.906±0.81 0.743±0.00
ENST00000536489 5.500±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000570638 N/A N/A N/A N/A 5.428±0.00 N/A N/A 4.406±0.00 N/A N/A N/A N/A N/A
ENST00000570893 N/A N/A N/A N/A N/A N/A N/A N/A 0.773±0.00 N/A N/A N/A 3.439±0.00
ENST00000572965 N/A N/A N/A 0.655±0.00 N/A N/A N/A N/A N/A N/A 2.257±0.00 N/A N/A
ENST00000573588 N/A N/A N/A N/A N/A N/A N/A N/A 0.551±0.00 N/A N/A N/A N/A
ENST00000573780 N/A N/A N/A N/A N/A 2.600±0.00 N/A N/A 1.714±0.00 N/A N/A N/A N/A
ENST00000574953 N/A N/A 1.352±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.577±0.00
ENST00000575130 N/A N/A N/A N/A N/A N/A N/A 2.469±0.00 N/A N/A N/A N/A N/A
ENST00000575736 N/A N/A N/A N/A N/A N/A 0.770±0.00 N/A N/A N/A N/A N/A N/A
ENST00000576001 N/A N/A N/A N/A 1.637±0.00 N/A N/A N/A N/A N/A 4.287±0.00 1.416±0.00 N/A
ENST00000576420 N/A N/A N/A N/A N/A N/A N/A 1.725±0.00 N/A N/A 1.914±0.00 N/A N/A
ENST00000618002 3.504±0.00 1.500±0.00 N/A 0.101±0.00 N/A N/A N/A N/A 1.951±0.00 N/A 1.636±0.00 3.658±0.67 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00005W CIL_00005W_0001 CGP 17:142789-386254
CIL_00017J CIL_00017J_0001 CGP 17:212389-423719

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005737 TAS cytoplasm
GO:0006886 IEA intracellular protein transport
GO:0006887 IEA exocytosis
GO:0008092 TAS cytoskeletal protein binding
GO:0017137 IEA Rab GTPase binding
GO:0017158 IEA regulation of calcium ion-dependent exocytosis
GO:0030141 IEA secretory granule
GO:0030274 IEA LIM domain binding
GO:0030667 IEA secretory granule membrane
GO:0042493 IEA response to drug
GO:0042593 IEA glucose homeostasis
GO:0045744 IEA negative regulation of G-protein coupled receptor protein signaling pathway
GO:0046872 IEA metal ion binding
GO:0050714 IEA positive regulation of protein secretion

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000044290 rph3al rabphilin 3A-like (without C2 domains) protein_coding Danio_rerio
ENSMUSG00000020847 Rph3al rabphilin 3A-like (without C2 domains) protein_coding Mus_musculus

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