C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: rabphilin 3A-like (without C2 domains)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000618002 RPH3AL-201 ENSG00000181031 9606 - 17:212389-352842 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainLiverOvaryPlacentaENST00000618002
Transcript ID Adipose Adrenal Brain Liver Ovary Placenta
ENST00000618002 3.504±0.00 1.500±0.00 0.101±0.00 1.951±0.00 1.636±0.00 3.658±0.67

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00005W CIL_00005W_0001 CGP 17:142789-386254
CIL_00017J CIL_00017J_0001 CGP 17:212389-423719

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005737 TAS cytoplasm
GO:0006886 IEA intracellular protein transport
GO:0006887 IEA exocytosis
GO:0008092 TAS cytoskeletal protein binding
GO:0017137 IEA Rab GTPase binding
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000066504 Rph3al-201 protein_coding Mus_musculus 0 900
ENSMUST00000121287 Rph3al-001 protein_coding Mus_musculus 0 900
ENSMUST00000108420 Rph3al-003 protein_coding Mus_musculus 0 433
ENSMUST00000021208 Rph3al-002 protein_coding Mus_musculus 0 433

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