C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ADP-ribosylation factor-like 6 interacting protein 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000182196 ARL6IP4 9606 + 12:122980060-122982913 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000315580 ARL6IP4-001 122980060-122982909 protein_coding
  ENST00000357866 ARL6IP4-011 122981140-122982676 protein_coding
  ENST00000392433 ARL6IP4-010 122980928-122982909 retained_intron
  ENST00000392435 ARL6IP4-018 122980191-122982711 protein_coding
  ENST00000412505 ARL6IP4-021 122980703-122982860 protein_coding
  ENST00000413381 ARL6IP4-013 122980231-122982538 protein_coding
  ENST00000426960 ARL6IP4-014 122980263-122982795 protein_coding
  ENST00000439686 ARL6IP4-019 122980748-122982706 protein_coding
  ENST00000442210 ARL6IP4-016 122980696-122982765 retained_intron
  ENST00000453766 ARL6IP4-003 122980189-122982909 protein_coding
  ENST00000454885 ARL6IP4-004 122980495-122982909 protein_coding
  ENST00000456762 ARL6IP4-015 122981137-122982731 protein_coding
  ENST00000536073 ARL6IP4-022 122981953-122982908 retained_intron
  ENST00000536502 ARL6IP4-007 122980721-122982873 retained_intron
  ENST00000539576 ARL6IP4-012 122980682-122982906 retained_intron
  ENST00000539770 ARL6IP4-005 122980179-122982908 nonsense_mediated_decay
  ENST00000540382 ARL6IP4-009 122980733-122982883 retained_intron
  ENST00000540708 ARL6IP4-006 122980716-122982890 retained_intron
  ENST00000542099 ARL6IP4-017 122980191-122982073 protein_coding
  ENST00000543566 ARL6IP4-002 122980060-122982913 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000315580ENST00000412505ENST00000413381ENST00000426960ENST00000439686ENST00000453766ENST00000454885ENST00000456762ENST00000536073ENST00000536502ENST00000543566
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000315580 N/A N/A 2.335±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000412505 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.250±0.00 45.994±0.00 44.940±5.94 N/A
ENST00000413381 N/A N/A N/A N/A 6.239±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000426960 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 67.335±13.73 38.829±6.27 N/A
ENST00000439686 171.480±0.00 222.041±0.00 N/A 91.399±0.00 167.698±0.00 84.647±78.63 51.628±0.00 100.145±0.00 77.670±0.00 99.654±97.17 34.503±0.00 72.519±41.18 73.914±11.25 189.662±93.57
ENST00000453766 N/A N/A N/A 8.846±0.00 N/A N/A N/A 8.449±0.00 N/A N/A 6.660±0.00 116.361±0.00 N/A N/A
ENST00000454885 N/A N/A N/A N/A 46.115±0.00 45.161±0.00 9.104±6.39 N/A N/A N/A 9.632±0.00 N/A N/A N/A
ENST00000456762 N/A N/A 13.985±0.00 36.113±10.08 11.884±0.00 8.243±0.00 5.749±0.00 32.610±0.00 21.198±0.00 7.189±0.00 17.586±0.00 10.203±0.00 N/A N/A
ENST00000536073 89.200±0.00 148.920±0.00 N/A N/A 76.525±0.00 N/A N/A 68.277±0.00 N/A N/A 18.685±0.00 87.966±0.00 65.448±14.28 N/A
ENST00000536502 N/A N/A N/A 57.558±0.00 N/A 45.107±0.00 14.835±0.00 41.063±0.00 30.096±0.00 N/A N/A N/A N/A N/A
ENST00000543566 N/A N/A N/A N/A N/A 3.532±0.00 N/A N/A N/A 2.337±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00084E CIL_00084E_0001 VISTA 12:122762377-123367178
CIL_00006P CIL_00006P_0002 CGP 12:122865328-122981649
CIL_0002PC CIL_0002PC_0001 CGP 12:122920951-122981649
CIL_0002P6 CIL_0002P6_0001 CGP 12:122974580-122982913
CIL_0002P7 CIL_0002P7_0001 CGP 12:122980060-123150015

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000051971 arl6ip4 ADP-ribosylation-like factor 6 interacting protein 4 protein_coding Danio_rerio
ENSMUSG00000029404 Arl6ip4 ADP-ribosylation factor-like 6 interacting protein 4 protein_coding Mus_musculus

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