C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: nuclear protein localization 4 homolog (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000182446 NPLOC4 9606 - 17:81556887-81648465 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000331134 NPLOC4-001 81556887-81637146 protein_coding
  ENST00000374747 NPLOC4-002 81561766-81637060 protein_coding
  ENST00000570300 NPLOC4-013 81608811-81648465 processed_transcript
  ENST00000570324 NPLOC4-014 81604572-81613402 nonsense_mediated_decay
  ENST00000571562 NPLOC4-011 81612679-81613347 processed_transcript
  ENST00000571714 NPLOC4-017 81559182-81572073 protein_coding
  ENST00000572346 NPLOC4-006 81559064-81566985 processed_transcript
  ENST00000572351 NPLOC4-015 81588091-81597319 processed_transcript
  ENST00000572760 NPLOC4-004 81558789-81566602 protein_coding
  ENST00000572824 NPLOC4-008 81559268-81569083 protein_coding
  ENST00000573212 NPLOC4-018 81559316-81569102 nonsense_mediated_decay
  ENST00000573328 NPLOC4-012 81604609-81608912 retained_intron
  ENST00000573519 NPLOC4-016 81559091-81569064 protein_coding
  ENST00000573876 NPLOC4-005 81559125-81566635 protein_coding
  ENST00000574095 NPLOC4-009 81636397-81637110 processed_transcript
  ENST00000574344 NPLOC4-010 81604664-81614381 processed_transcript
  ENST00000574897 NPLOC4-003 81564909-81637079 nonsense_mediated_decay
  ENST00000574964 NPLOC4-019 81559014-81560889 processed_transcript
  ENST00000576713 NPLOC4-007 81559396-81572108 retained_intron
  ENST00000576940 NPLOC4-020 81564213-81567495 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000331134ENST00000374747ENST00000573328ENST00000574897
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000331134 15.442±0.00 10.359±0.00 N/A 11.387±5.40 16.890±15.17 5.135±0.69 14.784±12.49 5.919±3.00 5.422±2.65 9.646±7.13 59.185±0.00 12.340±9.62 15.735±4.89 29.107±2.47
ENST00000374747 N/A 3.506±0.00 1.446±0.00 2.098±0.00 N/A 1.248±0.00 N/A 0.691±0.00 0.930±0.00 1.125±0.41 N/A 1.042±0.00 N/A N/A
ENST00000573328 N/A N/A N/A N/A N/A N/A 7.964±0.00 N/A N/A 11.809±0.00 N/A N/A N/A N/A
ENST00000574897 N/A N/A N/A N/A 1.219±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003BK CIL_0003BK_0001 CGP 17:81539885-81648465
CIL_0002HY CIL_0002HY_0001 CGP 17:81556887-81648749

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005783 ISS endoplasmic reticulum
GO:0007030 ISS Golgi organization
GO:0008270 IEA zinc ion binding
GO:0030433 ISS ER-associated ubiquitin-dependent protein catabolic process
GO:0042175 ISS nuclear outer membrane-endoplasmic reticulum membrane network
GO:0061025 ISS membrane fusion

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000071393 nploc4 nuclear protein localization 4 homolog (S. cerevisiae) protein_coding Danio_rerio
ENSMUSG00000039703 Nploc4 nuclear protein localization 4 homolog (S. cerevisiae) protein_coding Mus_musculus

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