C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tetratricopeptide repeat domain 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000182670 TTC3 9606 + 21:37073226-37203112 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000354749 TTC3-001 37085790-37203112 protein_coding
  ENST00000355666 TTC3-201 37073271-37203103 protein_coding
  ENST00000399010 TTC3-015 37073290-37099098 protein_coding
  ENST00000399017 TTC3-003 37081596-37203112 protein_coding
  ENST00000411496 TTC3-017 37153125-37165640 protein_coding
  ENST00000414818 TTC3-016 37144560-37153277 protein_coding
  ENST00000418766 TTC3-008 37073251-37165751 protein_coding
  ENST00000428693 TTC3-020 37191334-37201621 protein_coding
  ENST00000438055 TTC3-023 37073267-37165765 protein_coding
  ENST00000450533 TTC3-005 37073267-37151958 protein_coding
  ENST00000460328 TTC3-013 37091327-37096885 retained_intron
  ENST00000463216 TTC3-010 37073277-37135426 processed_transcript
  ENST00000469939 TTC3-019 37159519-37165765 processed_transcript
  ENST00000472398 TTC3-006 37156741-37186079 retained_intron
  ENST00000476784 TTC3-007 37107738-37203112 retained_intron
  ENST00000479930 TTC3-002 37085790-37203112 processed_transcript
  ENST00000481605 TTC3-009 37073277-37151967 processed_transcript
  ENST00000484047 TTC3-004 37083626-37093402 processed_transcript
  ENST00000485402 TTC3-022 37073258-37165765 processed_transcript
  ENST00000487711 TTC3-018 37153237-37165765 processed_transcript
  ENST00000488522 TTC3-021 37194453-37197947 processed_transcript
  ENST00000491952 TTC3-014 37091394-37095490 processed_transcript
  ENST00000492275 TTC3-011 37073226-37135411 processed_transcript
  ENST00000494243 TTC3-012 37073281-37135452 processed_transcript
  ENST00000540756 TTC3-024 37073281-37153323 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000354749ENST00000355666ENST00000399017ENST00000414818ENST00000450533ENST00000472398ENST00000476784ENST00000479930ENST00000540756
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000354749 N/A N/A 2.570±0.00 N/A N/A 3.053±0.00 0.889±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000355666 5.273±0.00 N/A N/A 4.950±0.00 4.106±0.00 4.537±2.43 1.161±0.00 1.823±0.42 4.998±0.00 N/A 1.896±0.40 5.512±2.44 1.404±0.88 2.602±0.20
ENST00000399017 N/A 1.126±0.00 2.563±0.00 N/A 6.560±0.00 3.551±0.00 1.021±0.23 0.948±0.00 3.578±0.00 4.089±0.00 0.479±0.00 2.780±0.19 N/A 1.764±0.00
ENST00000414818 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 17.495±0.00 16.519±0.00 16.986±0.00
ENST00000450533 N/A N/A N/A N/A N/A N/A 2.874±0.00 N/A N/A N/A 2.441±0.00 N/A N/A N/A
ENST00000472398 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.319±0.00
ENST00000476784 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.598±0.00 6.993±2.50 N/A N/A
ENST00000479930 N/A N/A N/A N/A 4.643±0.00 N/A N/A N/A N/A 4.407±0.00 0.617±0.00 3.421±0.00 N/A N/A
ENST00000540756 N/A N/A N/A 20.737±0.00 N/A N/A N/A 5.012±0.00 N/A 11.698±0.00 N/A 12.646±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001CX CIL_0001CX_0002 CGP 21:37059170-37203112
CIL_0001D0 CIL_0001D0_0002 CGP 21:37073226-37267919

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005739 IDA mitochondrion
GO:0005773 IEA vacuole
GO:0006511 IDA ubiquitin-dependent protein catabolic process
GO:0008270 IEA zinc ion binding
GO:0010771 IEA negative regulation of cell morphogenesis involved in differentiation
GO:0016874 IEA ligase activity
GO:0045665 IEA negative regulation of neuron differentiation
GO:0046872 IEA metal ion binding
GO:0070936 IDA protein K48-linked ubiquitination

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000086075 ttc3 tetratricopeptide repeat domain 3 protein_coding Danio_rerio
ENSMUSG00000040785 Ttc3 tetratricopeptide repeat domain 3 protein_coding Mus_musculus

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