C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tetratricopeptide repeat domain 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000476784 TTC3-007 ENSG00000182670 9606 + 21:37107738-37203112 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; MuscleOvaryENST00000476784
Transcript ID Muscle Ovary
ENST00000476784 0.598±0.00 6.993±2.50

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001CX CIL_0001CX_0002 CGP 21:37059170-37203112
CIL_0001D0 CIL_0001D0_0002 CGP 21:37073226-37267919

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000117648 Ttc3-001 protein_coding Mus_musculus 0 3114
ENSMUST00000122895 Ttc3-007 protein_coding Mus_musculus 0 2974
ENSMUST00000143145 Ttc3-004 nonsense_mediated_decay Mus_musculus 0 2974
ENSMUST00000151770 Ttc3-008 protein_coding Mus_musculus 0 2961
ENSMUST00000155692 Ttc3-003 protein_coding Mus_musculus 0 2961
ENSMUST00000147352 Ttc3-002 protein_coding Mus_musculus 0 2699
ENSMUST00000152117 Ttc3-005 protein_coding Mus_musculus 0 2540
ENSMUST00000150346 Ttc3-006 protein_coding Mus_musculus 0 2176
ENSMUST00000147046 Ttc3-009 protein_coding Mus_musculus 0 1515
ENSMUST00000153988 Ttc3-013 protein_coding Mus_musculus 0 833
ENSMUST00000141856 Ttc3-012 protein_coding Mus_musculus 0 619
ENSMUST00000150097 Ttc3-019 protein_coding Mus_musculus 0 584
ENSMUST00000141176 Ttc3-025 protein_coding Mus_musculus 0 475
ENSMUST00000145883 Ttc3-023 protein_coding Mus_musculus 0 475
ENSMUST00000139513 Ttc3-015 nonsense_mediated_decay Mus_musculus 0 418
ENSMUST00000157025 Ctr9-003 retained_intron Mus_musculus 0.0005 53
ENSMUST00000152019 Ctr9-002 retained_intron Mus_musculus 0.0005 53

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