C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tetratricopeptide repeat domain 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000399017 TTC3-003 ENSG00000182670 9606 + 21:37081596-37203112 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryTestisENST00000399017
Transcript ID Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000399017 1.126±0.00 2.563±0.00 6.560±0.00 3.551±0.00 1.021±0.23 0.948±0.00 3.578±0.00 4.089±0.00 0.479±0.00 2.780±0.19 1.764±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001CX CIL_0001CX_0002 CGP 21:37059170-37203112
CIL_0001D0 CIL_0001D0_0002 CGP 21:37073226-37267919

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005739 IDA mitochondrion
GO:0005773 IEA vacuole
GO:0006511 IDA ubiquitin-dependent protein catabolic process
GO:0008270 IEA zinc ion binding
GO:0010771 IEA negative regulation of cell morphogenesis involved in differentiation
GO:0016874 IEA ligase activity
GO:0045665 IEA negative regulation of neuron differentiation
GO:0046872 IEA metal ion binding
GO:0070936 IDA protein K48-linked ubiquitination

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000117648 Ttc3-001 protein_coding Mus_musculus 0 3965
ENSMUST00000151770 Ttc3-008 protein_coding Mus_musculus 0 3812
ENSMUST00000155692 Ttc3-003 protein_coding Mus_musculus 0 3812
ENSMUST00000143145 Ttc3-004 nonsense_mediated_decay Mus_musculus 0 3705
ENSMUST00000122895 Ttc3-007 protein_coding Mus_musculus 0 3356
ENSMUST00000147352 Ttc3-002 protein_coding Mus_musculus 0 3081
ENSMUST00000152117 Ttc3-005 protein_coding Mus_musculus 0 2540
ENSMUST00000150346 Ttc3-006 protein_coding Mus_musculus 0 2176
ENSMUST00000147046 Ttc3-009 protein_coding Mus_musculus 0 1515
ENSMUST00000119131 Ttc3-011 protein_coding Mus_musculus 0 865
ENSMUST00000153988 Ttc3-013 protein_coding Mus_musculus 0 833
ENSMUST00000145432 Ttc3-010 nonsense_mediated_decay Mus_musculus 0 745
ENSMUST00000141856 Ttc3-012 protein_coding Mus_musculus 0 619
ENSMUST00000150097 Ttc3-019 protein_coding Mus_musculus 0 584
ENSMUST00000141176 Ttc3-025 protein_coding Mus_musculus 0 475
ENSMUST00000145883 Ttc3-023 protein_coding Mus_musculus 0 475
ENSMUST00000139513 Ttc3-015 nonsense_mediated_decay Mus_musculus 0 418
ENSMUST00000127667 Ttc3-020 protein_coding Mus_musculus 0 261
ENSMUST00000149885 Ttc3-021 protein_coding Mus_musculus 0 233

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