C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001D0_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000086075-ENSDARG00000075650 CGP 7955 10:174836-206924
GeneTranscriptPositionBiotype
ENSDARG00000075650 (dscr3)
Down syndrome critical region gene 3 		ENSDART00000036375 (dscr3-001) 202083-206924 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0001D0_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000182670-ENSG00000157538 CGP 9606 21:37073226-37267919
GeneTranscriptPositionBiotype
ENSG00000157538 (DSCR3)
Down syndrome critical region gene 3 		ENST00000309117 (DSCR3-001) 37223420-37267532 protein_coding
ENST00000398998 (DSCR3-005) 37225544-37267532 protein_coding
ENST00000399000 (DSCR3-002) 37223420-37267919 processed_transcript
ENST00000399001 (DSCR3-006) 37225299-37267351 protein_coding
ENST00000462467 (DSCR3-010) 37261082-37267153 processed_transcript
ENST00000475009 (DSCR3-007) 37238205-37267403 retained_intron
ENST00000476950 (DSCR3-011) 37225472-37267346 protein_coding
ENST00000480452 (DSCR3-012) 37233292-37267318 processed_transcript
ENST00000488368 (DSCR3-003) 37225516-37267329 processed_transcript
ENST00000492514 (DSCR3-008) 37238356-37267301 processed_transcript
ENST00000495858 (DSCR3-013) 37230518-37233442 processed_transcript
ENST00000497493 (DSCR3-004) 37223420-37229483 retained_intron
ENST00000498789 (DSCR3-009) 37261082-37267340 processed_transcript
ENSG00000182670 (TTC3)
tetratricopeptide repeat domain 3 		ENST00000354749 (TTC3-001) 37085790-37203112 protein_coding
ENST00000355666 (TTC3-201) 37073271-37203103 protein_coding
ENST00000399010 (TTC3-015) 37073290-37099098 protein_coding
ENST00000399017 (TTC3-003) 37081596-37203112 protein_coding
ENST00000411496 (TTC3-017) 37153125-37165640 protein_coding
ENST00000414818 (TTC3-016) 37144560-37153277 protein_coding
ENST00000418766 (TTC3-008) 37073251-37165751 protein_coding
ENST00000428693 (TTC3-020) 37191334-37201621 protein_coding
ENST00000438055 (TTC3-023) 37073267-37165765 protein_coding
ENST00000450533 (TTC3-005) 37073267-37151958 protein_coding
ENST00000460328 (TTC3-013) 37091327-37096885 retained_intron
ENST00000463216 (TTC3-010) 37073277-37135426 processed_transcript
ENST00000469939 (TTC3-019) 37159519-37165765 processed_transcript
ENST00000472398 (TTC3-006) 37156741-37186079 retained_intron
ENST00000476784 (TTC3-007) 37107738-37203112 retained_intron
ENST00000479930 (TTC3-002) 37085790-37203112 processed_transcript
ENST00000481605 (TTC3-009) 37073277-37151967 processed_transcript
ENST00000484047 (TTC3-004) 37083626-37093402 processed_transcript
ENST00000485402 (TTC3-022) 37073258-37165765 processed_transcript
ENST00000487711 (TTC3-018) 37153237-37165765 processed_transcript
ENST00000488522 (TTC3-021) 37194453-37197947 processed_transcript
ENST00000491952 (TTC3-014) 37091394-37095490 processed_transcript
ENST00000492275 (TTC3-011) 37073226-37135411 processed_transcript
ENST00000494243 (TTC3-012) 37073281-37135452 processed_transcript
ENST00000540756 (TTC3-024) 37073281-37153323 protein_coding
ENSG00000230366 (DSCR9)
Down syndrome critical region gene 9 (non-protein coding) 		ENST00000454482 (DSCR9-001) 37208503-37221736 lincRNA
ENST00000578829 (DSCR9-002) 37208503-37220695 lincRNA
ENST00000581640 (DSCR9-005) 37208503-37220688 lincRNA
ENST00000584840 (DSCR9-004) 37208503-37220697 lincRNA
ENST00000585273 (DSCR9-003) 37208503-37220696 lincRNA
ENSG00000242553 (AP001432.14)
 ENST00000440629 (AP001432.14-001) 37221419-37237744 lincRNA
ENSG00000263969 (RN7SL678P)
RNA, 7SL, cytoplasmic 678, pseudogene 		ENST00000579533 (RN7SL678P-201) 37215605-37215903 misc_RNA
ENSG00000270116 (AP001429.1)
 ENST00000602568 (AP001429.1-001) 37100814-37101343 sense_intronic

Homo sapiens Ensembl (GRCh38)

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CIL_0001D0_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000040785-ENSMUSG00000022898 CGP 10090 16:94370618-94526830
GeneTranscriptPositionBiotype
ENSMUSG00000022898 (Dscr3)
Down syndrome critical region gene 3 		ENSMUST00000023615 (Dscr3-001) 94497783-94526830 protein_coding
ENSMUST00000125229 (Dscr3-005) 94502107-94510893 processed_transcript
ENSMUST00000127449 (Dscr3-002) 94504187-94526432 retained_intron
ENSMUST00000133944 (Dscr3-003) 94510166-94526441 retained_intron
ENSMUST00000142988 (Dscr3-004) 94511860-94526417 retained_intron
ENSMUSG00000040785 (Ttc3)
tetratricopeptide repeat domain 3 		ENSMUST00000117648 (Ttc3-001) 94370618-94469222 protein_coding
ENSMUST00000119131 (Ttc3-011) 94370798-94396626 protein_coding
ENSMUST00000122895 (Ttc3-007) 94370781-94442679 protein_coding
ENSMUST00000127667 (Ttc3-020) 94370797-94410840 protein_coding
ENSMUST00000127911 (Ttc3-018) 94370767-94409710 processed_transcript
ENSMUST00000129536 (Ttc3-028) 94466522-94468217 retained_intron
ENSMUST00000130960 (Ttc3-014) 94370751-94416360 processed_transcript
ENSMUST00000131429 (Ttc3-027) 94465161-94468885 retained_intron
ENSMUST00000139513 (Ttc3-015) 94370751-94418621 nonsense_mediated_decay
ENSMUST00000139607 (Ttc3-026) 94440093-94448745 retained_intron
ENSMUST00000141176 (Ttc3-025) 94425148-94433154 protein_coding
ENSMUST00000141192 (Ttc3-030) 94451126-94460077 nonsense_mediated_decay
ENSMUST00000141856 (Ttc3-012) 94370751-94422296 protein_coding
ENSMUST00000143145 (Ttc3-004) 94370757-94442679 nonsense_mediated_decay
ENSMUST00000145432 (Ttc3-010) 94370750-94396382 nonsense_mediated_decay
ENSMUST00000145883 (Ttc3-023) 94370823-94420280 protein_coding
ENSMUST00000147046 (Ttc3-009) 94370796-94427865 protein_coding
ENSMUST00000147352 (Ttc3-002) 94370739-94442667 protein_coding
ENSMUST00000149753 (Ttc3-024) 94370743-94403807 retained_intron
ENSMUST00000149885 (Ttc3-021) 94370797-94403343 protein_coding
ENSMUST00000150097 (Ttc3-019) 94370780-94415958 protein_coding
ENSMUST00000150346 (Ttc3-006) 94370743-94434345 protein_coding
ENSMUST00000151192 (Ttc3-022) 94370798-94412109 processed_transcript
ENSMUST00000151770 (Ttc3-008) 94370781-94442679 protein_coding
ENSMUST00000152117 (Ttc3-005) 94370767-94442669 protein_coding
ENSMUST00000153062 (Ttc3-016) 94370767-94390263 nonsense_mediated_decay
ENSMUST00000153988 (Ttc3-013) 94370749-94418693 protein_coding
ENSMUST00000154196 (Ttc3-029) 94457397-94467994 retained_intron
ENSMUST00000154243 (Ttc3-017) 94370767-94387369 nonsense_mediated_decay
ENSMUST00000155692 (Ttc3-003) 94370746-94442672 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001D0_0001ENSDARG00000075650ENSDART00000036375CIL_0001D0_0002ENSG00000157538ENST00000309117ENST00000398998ENST00000399000ENST00000399001ENST00000462467ENST00000475009ENST00000476950ENST00000480452ENST00000488368ENST00000492514ENST00000495858ENST00000497493ENST00000498789ENSG00000182670ENST00000354749ENST00000355666ENST00000399010ENST00000399017ENST00000411496ENST00000414818ENST00000418766ENST00000428693ENST00000438055ENST00000450533ENST00000460328ENST00000463216ENST00000469939ENST00000472398ENST00000476784ENST00000479930ENST00000481605ENST00000484047ENST00000485402ENST00000487711ENST00000488522ENST00000491952ENST00000492275ENST00000494243ENST00000540756ENSG00000230366ENST00000454482ENST00000578829ENST00000581640ENST00000584840ENST00000585273ENSG00000242553ENST00000440629ENSG00000263969ENST00000579533ENSG00000270116ENST00000602568CIL_0001D0_0003ENSMUSG00000022898ENSMUST00000023615ENSMUST00000125229ENSMUST00000127449ENSMUST00000133944ENSMUST00000142988ENSMUSG00000040785ENSMUST00000117648ENSMUST00000119131ENSMUST00000122895ENSMUST00000127667ENSMUST00000127911ENSMUST00000129536ENSMUST00000130960ENSMUST00000131429ENSMUST00000139513ENSMUST00000139607ENSMUST00000141176ENSMUST00000141192ENSMUST00000141856ENSMUST00000143145ENSMUST00000145432ENSMUST00000145883ENSMUST00000147046ENSMUST00000147352ENSMUST00000149753ENSMUST00000149885ENSMUST00000150097ENSMUST00000150346ENSMUST00000151192ENSMUST00000151770ENSMUST00000152117ENSMUST00000153062ENSMUST00000153988ENSMUST00000154196ENSMUST00000154243ENSMUST00000155692
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001D0_0001ENSDARG00000075650ENSDART00000036375CIL_0001D0_0002ENSG00000157538ENST00000309117ENST00000398998ENST00000399000ENST00000476950ENST00000488368ENST00000497493ENST00000498789ENSG00000182670ENST00000354749ENST00000355666ENST00000399017ENST00000414818ENST00000450533ENST00000472398ENST00000476784ENST00000479930ENST00000540756ENSG00000230366ENST00000454482ENST00000578829ENSG00000242553ENST00000440629ENSG00000263969ENST00000579533ENSG00000270116ENST00000602568CIL_0001D0_0003ENSMUSG00000022898ENSMUST00000023615ENSMUST00000125229ENSMUST00000127449ENSMUSG00000040785ENSMUST00000117648ENSMUST00000130960ENSMUST00000139513ENSMUST00000141176ENSMUST00000141192ENSMUST00000154196ENSMUST00000154243
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000075650 ENSDART00000036375 N/A N/A N/A 9.907±2.01 N/A N/A 11.241±3.53 1.846±0.00 2.096±0.00 N/A 6.184±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000157538 ENST00000309117 9.335±0.00 7.726±0.00 3.649±0.00 4.086±2.68 8.859±0.00 4.842±2.11 6.720±4.82 9.174±6.73 6.051±1.98 4.244±3.12 7.940±6.75 9.406±3.89 12.464±0.94 4.932±0.68
ENST00000398998 N/A N/A N/A N/A N/A N/A N/A 2.322±0.00 N/A N/A N/A N/A N/A N/A
ENST00000399000 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.888±0.12
ENST00000399001 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000462467 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000475009 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000476950 N/A N/A N/A N/A 3.468±0.00 N/A N/A N/A N/A 2.848±0.00 N/A N/A N/A N/A
ENST00000480452 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000488368 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.140±0.00 N/A N/A
ENST00000492514 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495858 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497493 N/A 1.016±0.00 N/A 0.284±0.00 N/A N/A 0.302±0.00 N/A N/A N/A N/A 0.600±0.00 N/A N/A
ENST00000498789 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.193±0.00 N/A 2.802±0.26
ENSG00000182670 ENST00000354749 N/A N/A 2.570±0.00 N/A N/A 3.053±0.00 0.889±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000355666 5.273±0.00 N/A N/A 4.950±0.00 4.106±0.00 4.537±2.43 1.161±0.00 1.823±0.42 4.998±0.00 N/A 1.896±0.40 5.512±2.44 1.404±0.88 2.602±0.20
ENST00000399010 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000399017 N/A 1.126±0.00 2.563±0.00 N/A 6.560±0.00 3.551±0.00 1.021±0.23 0.948±0.00 3.578±0.00 4.089±0.00 0.479±0.00 2.780±0.19 N/A 1.764±0.00
ENST00000411496 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000414818 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 17.495±0.00 16.519±0.00 16.986±0.00
ENST00000418766 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000428693 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000438055 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000450533 N/A N/A N/A N/A N/A N/A 2.874±0.00 N/A N/A N/A 2.441±0.00 N/A N/A N/A
ENST00000460328 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000463216 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000469939 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000472398 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.319±0.00
ENST00000476784 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.598±0.00 6.993±2.50 N/A N/A
ENST00000479930 N/A N/A N/A N/A 4.643±0.00 N/A N/A N/A N/A 4.407±0.00 0.617±0.00 3.421±0.00 N/A N/A
ENST00000481605 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484047 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000485402 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487711 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000488522 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491952 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000492275 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494243 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000540756 N/A N/A N/A 20.737±0.00 N/A N/A N/A 5.012±0.00 N/A 11.698±0.00 N/A 12.646±0.00 N/A N/A
ENSG00000230366 ENST00000454482 N/A N/A N/A 0.109±0.02 N/A N/A N/A N/A N/A 0.029±0.00 N/A 0.291±0.00 N/A 1.439±0.49
ENST00000578829 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.199±0.00 N/A N/A
ENST00000581640 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000584840 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000585273 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000242553 ENST00000440629 N/A N/A N/A 0.423±0.00 0.425±0.00 0.079±0.00 0.365±0.00 N/A 0.073±0.00 N/A N/A 0.467±0.23 0.221±0.13 N/A
ENSG00000263969 ENST00000579533 N/A 0.065±0.00 N/A N/A 0.276±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.196±0.14
ENSG00000270116 ENST00000602568 0.136±0.00 0.224±0.00 0.419±0.00 0.443±0.00 1.054±0.86 1.191±1.14 0.265±0.14 0.207±0.15 4.144±0.00 1.054±0.00 N/A 2.094±2.58 0.109±0.05 0.321±0.25
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000022898 ENSMUST00000023615 23.510±1.53 14.523±1.59 19.714±0.47 13.072±10.10 21.847±6.75 12.065±0.76 12.325±0.39 14.402±2.02 9.993±2.43 17.036±2.58 3.469±1.16 16.149±3.14 28.070±9.63 4.663±1.71
ENSMUST00000125229 N/A N/A N/A 9.940±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 39.076±0.00 2.991±0.00
ENSMUST00000127449 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.092±0.00 N/A 16.063±0.00 3.983±0.00
ENSMUST00000133944 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000142988 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000040785 ENSMUST00000117648 14.689±5.91 13.985±4.57 12.970±1.89 81.692±0.00 12.313±5.17 2.664±0.60 10.450±0.47 6.588±3.63 3.154±2.31 12.028±0.25 7.651±0.76 15.428±7.98 7.978±2.50 2.802±1.35
ENSMUST00000119131 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000122895 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000127667 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000127911 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000129536 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000130960 N/A 42.691±2.37 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000131429 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139513 N/A 53.586±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139607 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000141176 N/A N/A N/A 378.265±0.00 N/A N/A N/A N/A N/A N/A N/A 87.940±0.00 35.046±0.00 16.324±0.00
ENSMUST00000141192 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 60.996±0.00 N/A N/A
ENSMUST00000141856 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143145 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000145432 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000145883 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000147046 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000147352 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149753 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149885 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150097 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150346 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000151192 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000151770 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152117 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153062 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153988 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000154196 N/A N/A N/A 284.582±0.00 N/A N/A N/A N/A N/A N/A N/A 56.197±0.00 26.809±1.31 9.159±0.00
ENSMUST00000154243 N/A 37.262±7.76 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155692 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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