C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RNA binding motif protein 10
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000182872 RBM10 9606 + X:47144869-47186813 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000329236 RBM10-201 47145447-47186812 protein_coding
  ENST00000345781 RBM10-001 47145279-47186813 protein_coding
  ENST00000377604 RBM10-005 47144869-47186811 protein_coding
  ENST00000478410 RBM10-004 47179315-47181543 processed_transcript
  ENST00000496012 RBM10-003 47175012-47181762 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000329236ENST00000345781ENST00000377604
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000329236 9.977±0.00 9.727±0.00 N/A 7.300±0.00 9.533±0.00 11.151±0.00 5.357±0.00 9.935±0.00 N/A 3.760±0.00 8.475±0.00 13.483±9.86 9.944±0.96 5.553±3.52
ENST00000345781 4.970±0.00 8.478±0.00 1.418±0.00 2.383±0.00 4.754±2.03 4.848±1.46 N/A 8.852±0.00 3.193±2.15 2.407±0.88 N/A 7.999±3.95 13.396±3.25 5.979±0.87
ENST00000377604 N/A N/A 0.474±0.00 4.180±0.00 N/A 0.792±0.00 1.311±0.00 1.525±0.00 N/A N/A N/A 2.141±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005GB CIL_0005GB_0001 CGP X:47078355-47145504
CIL_0005GA CIL_0005GA_0001 CGP X:47142216-47186813
CIL_0005G9 CIL_0005G9_0001 CGP X:47144869-47215128

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006397 IEA mRNA processing
GO:0008150 ND biological_process
GO:0008270 IEA zinc ion binding
GO:0008285 IEA negative regulation of cell proliferation
GO:0008380 IEA RNA splicing
GO:0032403 IDA protein complex binding
GO:0034391 IEA regulation of smooth muscle cell apoptotic process
GO:0034393 IEA positive regulation of smooth muscle cell apoptotic process
GO:0042802 IPI identical protein binding
GO:0044822 IDA poly(A) RNA binding
GO:0046872 IEA metal ion binding
GO:0048025 IEA negative regulation of mRNA splicing, via spliceosome
GO:0070935 IEA 3'-UTR-mediated mRNA stabilization

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000077400 rbm10 RNA binding motif protein 10 protein_coding Danio_rerio
ENSMUSG00000031060 Rbm10 RNA binding motif protein 10 protein_coding Mus_musculus

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