C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding motif protein 10
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000329236 RBM10-201 ENSG00000182872 9606 + X:47145447-47186812 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLungMuscleOvaryPlacentaTestisENST00000329236
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Lung Muscle Ovary Placenta Testis
ENST00000329236 9.977±0.00 9.727±0.00 7.300±0.00 9.533±0.00 11.151±0.00 5.357±0.00 9.935±0.00 3.760±0.00 8.475±0.00 13.483±9.86 9.944±0.96 5.553±3.52

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005GB CIL_0005GB_0001 CGP X:47078355-47145504
CIL_0005GA CIL_0005GA_0001 CGP X:47142216-47186813
CIL_0005G9 CIL_0005G9_0001 CGP X:47144869-47215128

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006397 IEA mRNA processing
GO:0008150 ND biological_process
GO:0008270 IEA zinc ion binding
GO:0008285 IEA negative regulation of cell proliferation
GO:0008380 IEA RNA splicing
GO:0032403 IDA protein complex binding
GO:0034391 IEA regulation of smooth muscle cell apoptotic process
GO:0034393 IEA positive regulation of smooth muscle cell apoptotic process
GO:0042802 IPI identical protein binding
GO:0044822 IDA poly(A) RNA binding
GO:0046872 IEA metal ion binding
GO:0048025 IEA negative regulation of mRNA splicing, via spliceosome
GO:0070935 IEA 3'-UTR-mediated mRNA stabilization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000115375 Rbm10-004 protein_coding Mus_musculus 0 3849
ENSMUST00000115374 Rbm10-001 protein_coding Mus_musculus 0 3788
ENSMUST00000064911 Rbm10-201 protein_coding Mus_musculus 0 3624
ENSMUST00000177738 Rbm10-203 protein_coding Mus_musculus 0 3603
ENSMUST00000084383 Rbm10-002 protein_coding Mus_musculus 0 3000
ENSMUST00000082089 Rbm10-202 protein_coding Mus_musculus 0 2970
ENSMUST00000118151 Gm12799-001 processed_pseudogene Mus_musculus 0 2867
ENSMUST00000117459 Gm15455-001 processed_pseudogene Mus_musculus 0 2835
ENSMUST00000141128 Rbm10-003 processed_transcript Mus_musculus 0 1973

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