C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding motif protein 10
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000345781 RBM10-001 ENSG00000182872 9606 + X:47145279-47186813 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverLungOvaryPlacentaTestisENST00000345781
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENST00000345781 4.970±0.00 8.478±0.00 1.418±0.00 2.383±0.00 4.754±2.03 4.848±1.46 8.852±0.00 3.193±2.15 2.407±0.88 7.999±3.95 13.396±3.25 5.979±0.87

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005GB CIL_0005GB_0001 CGP X:47078355-47145504
CIL_0005GA CIL_0005GA_0001 CGP X:47142216-47186813
CIL_0005G9 CIL_0005G9_0001 CGP X:47144869-47215128

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006397 IEA mRNA processing
GO:0008150 ND biological_process
GO:0008270 IEA zinc ion binding
GO:0008380 IEA RNA splicing
GO:0032403 IDA protein complex binding
GO:0042802 IPI identical protein binding
GO:0044822 IDA poly(A) RNA binding
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000084383 Rbm10-002 protein_coding Mus_musculus 0 3522
ENSMUST00000082089 Rbm10-202 protein_coding Mus_musculus 0 3225
ENSMUST00000118151 Gm12799-001 processed_pseudogene Mus_musculus 0 3107
ENSMUST00000117459 Gm15455-001 processed_pseudogene Mus_musculus 0 3085
ENSMUST00000115374 Rbm10-001 protein_coding Mus_musculus 0 3001
ENSMUST00000115375 Rbm10-004 protein_coding Mus_musculus 0 2981
ENSMUST00000064911 Rbm10-201 protein_coding Mus_musculus 0 2970
ENSMUST00000177738 Rbm10-203 protein_coding Mus_musculus 0 2950
ENSMUST00000141128 Rbm10-003 processed_transcript Mus_musculus 0 2494

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