C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RNA binding motif protein 10
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000031060 Rbm10 10090 + X:20617503-20650901 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000064911 Rbm10-201 20620098-20650684 protein_coding
  ENSMUST00000082089 Rbm10-202 20620098-20650684 protein_coding
  ENSMUST00000084383 Rbm10-002 20617783-20650901 protein_coding
  ENSMUST00000115374 Rbm10-001 20617622-20650901 protein_coding
  ENSMUST00000115375 Rbm10-004 20617503-20650888 protein_coding
  ENSMUST00000141128 Rbm10-003 20617785-20649196 processed_transcript
  ENSMUST00000177738 Rbm10-203 20620098-20650684 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverLungOvaryPlacentaTestisENSMUST00000064911ENSMUST00000082089ENSMUST00000084383ENSMUST00000115374ENSMUST00000141128ENSMUST00000177738
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000064911 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.974±0.00
ENSMUST00000082089 N/A 7.558±0.09 N/A N/A N/A 9.303±1.78 N/A N/A 7.223±0.00 11.002±2.64 N/A 2.436±0.00
ENSMUST00000084383 N/A N/A 9.146±0.59 17.519±7.33 N/A N/A 10.044±0.00 12.350±4.48 N/A 20.678±14.03 20.077±11.00 2.992±1.34
ENSMUST00000115374 N/A N/A N/A N/A N/A N/A N/A N/A 4.329±0.00 N/A N/A 1.108±0.24
ENSMUST00000141128 12.107±3.03 22.275±2.66 N/A 11.185±0.00 15.558±2.82 18.074±3.64 15.641±0.64 10.529±0.86 13.005±0.73 25.012±2.49 N/A 1.924±0.23
ENSMUST00000177738 N/A N/A N/A 6.588±0.00 N/A N/A N/A 6.616±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005GB CIL_0005GB_0002 CGP X:20549787-20617619
CIL_0005GA CIL_0005GA_0002 CGP X:20615326-20650901
CIL_0005G9 CIL_0005G9_0002 CGP X:20617503-20683179

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000166 IEA nucleotide binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0008270 IEA zinc ion binding
GO:0008285 IDA negative regulation of cell proliferation
GO:0032403 IEA protein complex binding
GO:0034391 IGI regulation of smooth muscle cell apoptotic process
GO:0034393 IDA positive regulation of smooth muscle cell apoptotic process
GO:0042802 IEA identical protein binding
GO:0044822 IEA poly(A) RNA binding
GO:0048025 IMP negative regulation of mRNA splicing, via spliceosome
GO:0070935 IDA 3'-UTR-mediated mRNA stabilization

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000077400 rbm10 RNA binding motif protein 10 protein_coding Danio_rerio
ENSG00000182872 RBM10 RNA binding motif protein 10 protein_coding Homo_sapiens

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