C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: spermatogenesis associated 13
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000182957 SPATA13 9606 + 13:23979805-24307074 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000343003 SPATA13-201 24270687-24307074 protein_coding
  ENST00000382095 SPATA13-001 24160748-24307072 protein_coding
  ENST00000382108 SPATA13-202 24160716-24307074 protein_coding
  ENST00000399949 SPATA13-006 24270688-24303904 protein_coding
  ENST00000409126 SPATA13-011 24270719-24303206 protein_coding
  ENST00000424834 SPATA13-008 23979805-24307069 protein_coding
  ENST00000434675 SPATA13-010 24251694-24303121 protein_coding
  ENST00000454083 SPATA13-005 24270841-24286393 protein_coding
  ENST00000466831 SPATA13-007 24160722-24224798 retained_intron
  ENST00000474317 SPATA13-002 24224241-24249663 processed_transcript
  ENST00000488060 SPATA13-004 24272689-24278769 protein_coding
  ENST00000494772 SPATA13-003 24251718-24278769 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000343003ENST00000382095ENST00000382108ENST00000399949ENST00000424834ENST00000434675ENST00000466831
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000343003 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.729±0.00 1.068±0.00 1.750±0.00
ENST00000382095 1.056±0.00 1.658±0.00 N/A 2.127±0.00 2.036±0.00 1.356±0.00 0.496±0.00 5.839±0.00 2.323±0.00 3.210±0.00 N/A 2.830±1.34 0.421±0.09 0.924±0.43
ENST00000382108 0.754±0.00 0.608±0.00 0.720±0.00 2.344±1.48 0.995±0.37 N/A 0.376±0.00 1.692±0.25 1.248±0.52 1.893±0.60 0.057±0.00 2.695±1.02 0.628±0.27 0.523±0.00
ENST00000399949 N/A N/A N/A N/A N/A N/A 0.499±0.00 N/A N/A 1.474±0.00 0.120±0.00 N/A N/A N/A
ENST00000424834 N/A N/A 1.202±0.00 N/A N/A 1.344±0.00 N/A N/A N/A 0.845±0.00 N/A N/A N/A N/A
ENST00000434675 N/A N/A 3.269±0.00 N/A N/A N/A N/A 1.174±0.00 1.231±0.00 N/A N/A 3.959±0.00 N/A N/A
ENST00000466831 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.470±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008FK CIL_0008FK_0001 VISTA 13:23782295-24387118
CIL_0000G5 CIL_0000G5_0002 CGP 13:23979805-24322535

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005085 IMP guanyl-nucleotide exchange factor activity
GO:0005089 IEA Rho guanyl-nucleotide exchange factor activity
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0016477 IMP cell migration
GO:0030027 IDA lamellipodium
GO:0030032 IMP lamellipodium assembly
GO:0030175 IDA filopodium
GO:0030334 IMP regulation of cell migration
GO:0030676 IMP Rac guanyl-nucleotide exchange factor activity
GO:0032321 IEA positive regulation of Rho GTPase activity
GO:0032587 IDA ruffle membrane
GO:0032855 IMP positive regulation of Rac GTPase activity
GO:0035023 IEA regulation of Rho protein signal transduction
GO:0043547 IMP positive regulation of GTPase activity
GO:0046847 IMP filopodium assembly

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000062837 spata13 spermatogenesis associated 13 protein_coding Danio_rerio
ENSMUSG00000021990 Spata13 spermatogenesis associated 13 protein_coding Mus_musculus

Loading