C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: spermatogenesis associated 13
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000399949 SPATA13-006 ENSG00000182957 9606 + 13:24270688-24303904 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; HeartLungMuscleENST00000399949
Transcript ID Heart Lung Muscle
ENST00000399949 0.499±0.00 1.474±0.00 0.120±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008FK CIL_0008FK_0001 VISTA 13:23782295-24387118
CIL_0000G5 CIL_0000G5_0002 CGP 13:23979805-24322535

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005085 IMP guanyl-nucleotide exchange factor activity
GO:0005089 IEA Rho guanyl-nucleotide exchange factor activity
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0016477 IMP cell migration
GO:0030027 IDA lamellipodium
GO:0030032 IMP lamellipodium assembly
GO:0030175 IDA filopodium
GO:0030334 IMP regulation of cell migration
GO:0030676 IMP Rac guanyl-nucleotide exchange factor activity
GO:0032587 IDA ruffle membrane
GO:0032855 IMP positive regulation of Rac GTPase activity
GO:0035023 IEA regulation of Rho protein signal transduction
GO:0043547 IMP positive regulation of GTPase activity
GO:0046847 IMP filopodium assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000162945 Spata13-002 protein_coding Mus_musculus 0 1986
ENSMUST00000022566 Spata13-201 protein_coding Mus_musculus 0 1890
ENSMUST00000160973 Spata13-001 protein_coding Mus_musculus 0 1890
ENSMUST00000162939 Spata13-003 retained_intron Mus_musculus 0 1081
ENSMUST00000159747 Arhgef4-004 protein_coding Mus_musculus 0 429
ENSMUST00000047664 Arhgef4-001 protein_coding Mus_musculus 0 398
ENSMUST00000162599 Arhgef4-005 protein_coding Mus_musculus 0 241

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