C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: spermatogenesis associated 13
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000021990 Spata13 10090 + 14:60634001-60764556 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000022566 Spata13-201 60634729-60764556 protein_coding
  ENSMUST00000159135 Spata13-004 60634755-60690893 processed_transcript
  ENSMUST00000159169 Spata13-006 60634001-60691367 protein_coding
  ENSMUST00000159476 Spata13-007 60702953-60706874 processed_transcript
  ENSMUST00000159729 Spata13-005 60634734-60691408 protein_coding
  ENSMUST00000160095 Spata13-008 60691975-60709569 protein_coding
  ENSMUST00000160973 Spata13-001 60634243-60764549 protein_coding
  ENSMUST00000162131 Spata13-009 60706733-60750016 protein_coding
  ENSMUST00000162939 Spata13-003 60751077-60762666 retained_intron
  ENSMUST00000162945 Spata13-002 60732906-60764549 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000022566ENSMUST00000160973ENSMUST00000162131ENSMUST00000162939ENSMUST00000162945
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000022566 0.607±0.17 4.931±1.18 1.680±0.35 1.687±0.80 0.516±0.00 0.990±0.21 0.684±0.30 1.879±0.73 1.634±0.54 1.325±0.26 0.139±0.05 2.761±1.16 0.955±0.18 0.288±0.09
ENSMUST00000160973 0.748±0.00 5.942±0.89 N/A N/A 1.003±0.13 1.444±0.38 0.791±0.00 2.367±1.10 0.990±0.43 1.342±0.47 0.206±0.18 2.644±1.49 0.377±0.11 0.280±0.05
ENSMUST00000162131 N/A N/A N/A N/A N/A 5.995±0.18 N/A N/A N/A N/A N/A N/A N/A 1.055±0.00
ENSMUST00000162939 1.452±0.14 N/A N/A N/A 1.866±0.25 2.785±0.87 0.773±0.00 2.287±0.61 N/A 1.652±0.30 0.263±0.00 4.329±1.05 N/A N/A
ENSMUST00000162945 1.169±0.45 N/A 10.881±1.87 2.330±0.35 2.570±1.40 2.573±0.29 2.181±0.28 2.795±0.62 2.392±0.77 2.086±0.44 0.273±0.10 3.459±1.13 1.904±0.83 0.862±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008FK CIL_0008FK_0002 VISTA 14:60252726-60856031
CIL_0000G5 CIL_0000G5_0003 CGP 14:60634001-60780869

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005085 ISS guanyl-nucleotide exchange factor activity
GO:0005089 IEA Rho guanyl-nucleotide exchange factor activity
GO:0005737 ISS cytoplasm
GO:0016477 ISS cell migration
GO:0030027 ISS lamellipodium
GO:0030032 ISS lamellipodium assembly
GO:0030175 ISS filopodium
GO:0030334 ISS regulation of cell migration
GO:0030676 ISS Rac guanyl-nucleotide exchange factor activity
GO:0032321 IEA positive regulation of Rho GTPase activity
GO:0032587 ISS ruffle membrane
GO:0032855 ISS positive regulation of Rac GTPase activity
GO:0035556 IEA intracellular signal transduction
GO:0043547 ISS positive regulation of GTPase activity
GO:0046847 ISS filopodium assembly

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000062837 spata13 spermatogenesis associated 13 protein_coding Danio_rerio
ENSG00000182957 SPATA13 spermatogenesis associated 13 protein_coding Homo_sapiens
ENSG00000273167 RP11-307N16.6 protein_coding Homo_sapiens

Loading