C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: spermatogenesis associated 13
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000434675 SPATA13-010 ENSG00000182957 9606 + 13:24251694-24303121 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderKidneyLiverOvaryENST00000434675
Transcript ID Bladder Kidney Liver Ovary
ENST00000434675 3.269±0.00 1.174±0.00 1.231±0.00 3.959±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008FK CIL_0008FK_0001 VISTA 13:23782295-24387118
CIL_0000G5 CIL_0000G5_0002 CGP 13:23979805-24322535

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005089 IEA Rho guanyl-nucleotide exchange factor activity
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0032321 IEA positive regulation of Rho GTPase activity
GO:0035023 IEA regulation of Rho protein signal transduction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000022566 Spata13-201 protein_coding Mus_musculus 0 1363
ENSMUST00000162945 Spata13-002 protein_coding Mus_musculus 0 1363
ENSMUST00000160973 Spata13-001 protein_coding Mus_musculus 0 1363
ENSMUST00000162939 Spata13-003 retained_intron Mus_musculus 0 1081
ENSMUST00000047664 Arhgef4-001 protein_coding Mus_musculus 0 241
ENSMUST00000162599 Arhgef4-005 protein_coding Mus_musculus 0 241
ENSMUST00000159747 Arhgef4-004 protein_coding Mus_musculus 0 241

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