C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: 4-aminobutyrate aminotransferase
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000183044 ABAT 9606 + 16:8674565-8784575 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000268251 ABAT-001 8674565-8784575 protein_coding
  ENST00000396600 ABAT-201 8712969-8784575 protein_coding
  ENST00000425191 ABAT-005 8720716-8781590 protein_coding
  ENST00000561870 ABAT-013 8712955-8748135 protein_coding
  ENST00000562115 ABAT-011 8720822-8757804 nonsense_mediated_decay
  ENST00000563215 ABAT-004 8713362-8715633 processed_transcript
  ENST00000563992 ABAT-007 8674617-8737473 retained_intron
  ENST00000564453 ABAT-015 8765785-8768846 retained_intron
  ENST00000564714 ABAT-008 8674596-8750456 protein_coding
  ENST00000565016 ABAT-012 8713601-8750485 protein_coding
  ENST00000565671 ABAT-014 8746002-8760429 processed_transcript
  ENST00000566590 ABAT-002 8712990-8781531 nonsense_mediated_decay
  ENST00000567812 ABAT-003 8713614-8781579 protein_coding
  ENST00000568847 ABAT-009 8712837-8746025 protein_coding
  ENST00000569156 ABAT-006 8720719-8781522 protein_coding
  ENST00000569695 ABAT-010 8712968-8713865 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainColonHeartKidneyLiverMuscleOvaryPlacentaTestisENST00000268251ENST00000396600ENST00000569156
Transcript ID Bladder Brain Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENST00000268251 14.326±0.00 39.280±22.89 4.860±3.04 2.270±1.43 44.464±24.79 110.896±0.00 N/A 5.839±1.89 5.856±0.00 11.808±4.00
ENST00000396600 N/A 3.096±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000569156 N/A N/A N/A N/A N/A N/A 0.356±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008RJ CIL_0008RJ_0001 VISTA 16:8081301-8682556
CIL_0007RL CIL_0007RL_0001 VISTA 16:8108831-8709719
CIL_0000ER CIL_0000ER_0001 CGP 16:8621683-8784575
CIL_0000EU CIL_0000EU_0001 CGP 16:8674565-8797648

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001666 IEA response to hypoxia
GO:0003867 TAS:IEA 4-aminobutyrate transaminase activity
GO:0005739 ISS mitochondrion
GO:0005759 TAS mitochondrial matrix
GO:0007268 TAS synaptic transmission
GO:0007269 TAS neurotransmitter secretion
GO:0007620 IEA copulation
GO:0007626 IEA locomotory behavior
GO:0008483 IEA transaminase activity
GO:0009448 IEA gamma-aminobutyric acid metabolic process
GO:0009450 NAS gamma-aminobutyric acid catabolic process
GO:0010039 IEA response to iron ion
GO:0030170 IEA:IDA pyridoxal phosphate binding
GO:0032144 IDA 4-aminobutyrate transaminase complex
GO:0032145 ISS succinate-semialdehyde dehydrogenase binding
GO:0035094 IEA response to nicotine
GO:0042135 NAS neurotransmitter catabolic process
GO:0042220 IEA response to cocaine
GO:0042493 IEA response to drug
GO:0042803 IPI protein homodimerization activity
GO:0043005 IEA neuron projection
GO:0045471 IEA response to ethanol
GO:0045776 IEA negative regulation of blood pressure
GO:0047298 IEA (S)-3-amino-2-methylpropionate transaminase activity
GO:0048148 ISS behavioral response to cocaine
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000006031 abat 4-aminobutyrate aminotransferase protein_coding Danio_rerio
ENSMUSG00000057880 Abat 4-aminobutyrate aminotransferase protein_coding Mus_musculus

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