C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: 4-aminobutyrate aminotransferase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000268251 ABAT-001 ENSG00000183044 9606 + 16:8674565-8784575 protein_coding

Homo sapiens EnsemblGRCh38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainColonHeartKidneyLiverOvaryPlacentaTestisENST00000268251
Transcript ID Bladder Brain Colon Heart Kidney Liver Ovary Placenta Testis
ENST00000268251 14.326±0.00 39.280±22.89 4.860±3.04 2.270±1.43 44.464±24.79 110.896±0.00 5.839±1.89 5.856±0.00 11.808±4.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008RJ CIL_0008RJ_0001 VISTA 16:8081301-8682556
CIL_0007RL CIL_0007RL_0001 VISTA 16:8108831-8709719
CIL_0000ER CIL_0000ER_0001 CGP 16:8621683-8784575
CIL_0000EU CIL_0000EU_0001 CGP 16:8674565-8797648

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003867 TAS:IEA 4-aminobutyrate transaminase activity
GO:0005739 ISS mitochondrion
GO:0005759 TAS mitochondrial matrix
GO:0007268 TAS synaptic transmission
GO:0007269 TAS neurotransmitter secretion
GO:0008483 IEA transaminase activity
GO:0009448 IEA gamma-aminobutyric acid metabolic process
GO:0009450 NAS gamma-aminobutyric acid catabolic process
GO:0030170 IEA:IDA pyridoxal phosphate binding
GO:0032144 IDA 4-aminobutyrate transaminase complex
GO:0032145 ISS succinate-semialdehyde dehydrogenase binding
GO:0042135 NAS neurotransmitter catabolic process
GO:0042803 IPI protein homodimerization activity
GO:0047298 IEA (S)-3-amino-2-methylpropionate transaminase activity
GO:0048148 ISS behavioral response to cocaine
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000065987 Abat-001 protein_coding Mus_musculus 0 1860
ENSMUST00000115839 Abat-005 protein_coding Mus_musculus 0 1057
ENSMUST00000138987 Abat-007 protein_coding Mus_musculus 0 523
ENSMUST00000128459 Abat-006 processed_transcript Mus_musculus 0 411

Loading