C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: 4-aminobutyrate aminotransferase
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000057880 Abat 10090 + 16:8513429-8621568 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000065987 Abat-001 8513429-8621568 protein_coding
  ENSMUST00000115838 Abat-003 8513481-8603047 protein_coding
  ENSMUST00000115839 Abat-005 8513485-8619570 protein_coding
  ENSMUST00000128459 Abat-006 8612878-8618577 processed_transcript
  ENSMUST00000138987 Abat-007 8572902-8605633 protein_coding
  ENSMUST00000140795 Abat-002 8513483-8580688 retained_intron
  ENSMUST00000144444 Abat-004 8583627-8603047 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000065987ENSMUST00000115839ENSMUST00000138987
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000065987 7.871±2.31 19.671±7.57 5.594±1.57 23.195±4.95 1.759±0.59 27.565±7.67 3.997±0.76 112.362±5.66 46.311±35.70 1.045±0.20 0.618±0.27 12.239±4.24 5.497±5.79 5.806±2.60
ENSMUST00000115839 5.352±0.96 19.729±4.34 N/A 29.695±0.00 1.358±0.30 33.355±2.05 1.750±0.19 46.826±13.03 42.546±9.76 1.207±0.15 N/A 9.078±1.94 2.232±1.59 2.620±0.73
ENSMUST00000138987 N/A N/A N/A 112.264±0.00 N/A N/A N/A N/A N/A N/A N/A 17.677±0.00 3.561±0.44 6.968±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007RL CIL_0007RL_0002 VISTA 16:7923606-8524476
CIL_0000ER CIL_0000ER_0002 CGP 16:8470788-8621568
CIL_0000EU CIL_0000EU_0002 CGP 16:8513429-8637712

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001666 IEA response to hypoxia
GO:0003867 ISS 4-aminobutyrate transaminase activity
GO:0005739 ISS mitochondrion
GO:0007620 IEA copulation
GO:0007626 IEA locomotory behavior
GO:0009448 IEA gamma-aminobutyric acid metabolic process
GO:0010039 IEA response to iron ion
GO:0030170 ISS pyridoxal phosphate binding
GO:0032144 ISS 4-aminobutyrate transaminase complex
GO:0032145 ISS succinate-semialdehyde dehydrogenase binding
GO:0035094 IEA response to nicotine
GO:0042135 IEA neurotransmitter catabolic process
GO:0042220 IEA response to cocaine
GO:0042493 IEA response to drug
GO:0042803 ISS protein homodimerization activity
GO:0043005 IEA neuron projection
GO:0045471 IEA response to ethanol
GO:0045776 IEA negative regulation of blood pressure
GO:0047298 IEA (S)-3-amino-2-methylpropionate transaminase activity
GO:0048148 IMP behavioral response to cocaine
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000006031 abat 4-aminobutyrate aminotransferase protein_coding Danio_rerio
ENSG00000183044 ABAT 4-aminobutyrate aminotransferase protein_coding Homo_sapiens

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