C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ephrin-A5
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000184349 EFNA5 9606 - 5:107376889-107670895 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000333274 EFNA5-001 107376889-107670895 protein_coding
  ENST00000504941 EFNA5-002 107426976-107670885 retained_intron
  ENST00000505499 EFNA5-005 107427217-107506191 processed_transcript
  ENST00000509503 EFNA5-003 107381238-107670627 protein_coding
  ENST00000510359 EFNA5-004 107380984-107388553 processed_transcript
  ENST00000611503 EFNA5-201 107376889-107427514 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENST00000333274ENST00000504941ENST00000510359ENST00000611503
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000333274 0.430±0.00 0.263±0.00 N/A 1.228±0.27 2.105±1.21 0.539±0.07 1.984±0.00 0.141±0.00 0.224±0.00 N/A 1.094±0.63 2.622±0.00 0.847±0.18
ENST00000504941 N/A N/A 2.162±0.00 N/A 2.991±0.00 2.340±0.00 N/A 0.982±0.00 0.750±0.00 N/A N/A N/A N/A
ENST00000510359 N/A N/A N/A N/A N/A N/A N/A 1.457±0.00 N/A N/A N/A N/A 1.190±0.00
ENST00000611503 N/A 0.236±0.00 N/A N/A N/A N/A N/A N/A 0.563±0.00 0.024±0.00 0.801±0.00 0.957±0.00 0.156±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000760 CIL_000760_0001 CGP 5:103548855-107670895
CIL_0008LI CIL_0008LI_0001 VISTA 5:107178160-107778978
CIL_0008LC CIL_0008LC_0001 VISTA 5:107273815-107875311
CIL_0004Z5 CIL_0004Z5_0001 CGP 5:107376889-108382098

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005886 ISS plasma membrane
GO:0007399 TAS nervous system development
GO:0007411 IBA axon guidance
GO:0016020 IEA membrane
GO:0022407 IDA regulation of cell-cell adhesion
GO:0031290 IEA retinal ganglion cell axon guidance
GO:0031362 IDA anchored component of external side of plasma membrane
GO:0032314 ISS regulation of Rac GTPase activity
GO:0032319 IDA regulation of Rho GTPase activity
GO:0032956 IDA regulation of actin cytoskeleton organization
GO:0045499 IEA chemorepellent activity
GO:0046875 IPI ephrin receptor binding
GO:0048013 IDA ephrin receptor signaling pathway
GO:0050731 ISS positive regulation of peptidyl-tyrosine phosphorylation
GO:0050919 IEA negative chemotaxis
GO:0051893 IDA regulation of focal adhesion assembly
GO:0061178 ISS regulation of insulin secretion involved in cellular response to glucose stimulus
GO:0070507 IDA regulation of microtubule cytoskeleton organization

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000057223 efna5b ephrin A5b protein_coding Danio_rerio
ENSDARG00000089790 efna5a ephrin A5a protein_coding Danio_rerio
ENSMUSG00000048915 Efna5 ephrin A5 protein_coding Mus_musculus

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