C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ephrin-A5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000333274 EFNA5-001 ENSG00000184349 9606 - 5:107376889-107670895 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLiverLungOvaryPlacentaTestisENST00000333274
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENST00000333274 0.430±0.00 0.263±0.00 1.228±0.27 2.105±1.21 0.539±0.07 1.984±0.00 0.141±0.00 0.224±0.00 1.094±0.63 2.622±0.00 0.847±0.18

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000760 CIL_000760_0001 CGP 5:103548855-107670895
CIL_0008LI CIL_0008LI_0001 VISTA 5:107178160-107778978
CIL_0008LC CIL_0008LC_0001 VISTA 5:107273815-107875311
CIL_0004Z5 CIL_0004Z5_0001 CGP 5:107376889-108382098

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005886 ISS plasma membrane
GO:0007399 TAS nervous system development
GO:0007411 IBA axon guidance
GO:0016020 IEA membrane
GO:0022407 IDA regulation of cell-cell adhesion
GO:0031290 IEA retinal ganglion cell axon guidance
GO:0031362 IDA anchored component of external side of plasma membrane
GO:0032314 ISS regulation of Rac GTPase activity
GO:0032319 IDA regulation of Rho GTPase activity
GO:0032956 IDA regulation of actin cytoskeleton organization
GO:0045499 IEA chemorepellent activity
GO:0046875 IPI ephrin receptor binding
GO:0048013 IDA ephrin receptor signaling pathway
GO:0050731 ISS positive regulation of peptidyl-tyrosine phosphorylation
GO:0050919 IEA negative chemotaxis
GO:0051893 IDA regulation of focal adhesion assembly
GO:0061178 ISS regulation of insulin secretion involved in cellular response to glucose stimulus
GO:0070507 IDA regulation of microtubule cytoskeleton organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000076840 Efna5-001 protein_coding Mus_musculus 0 1764
ENSMUST00000078839 Efna5-002 protein_coding Mus_musculus 0 808

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