C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ephrin A5
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000048915 Efna5 10090 - 17:62604184-62881317 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000076840 Efna5-001 62604184-62881317 protein_coding
  ENSMUST00000078839 Efna5-002 62607319-62881144 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000076840ENSMUST00000078839
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000076840 0.924±0.15 1.716±0.28 4.121±3.12 1.686±0.00 0.485±0.13 0.586±0.23 0.403±0.22 0.516±0.13 0.046±0.02 1.249±0.50 0.325±0.24 0.115±0.09
ENSMUST00000078839 N/A N/A N/A N/A N/A N/A N/A N/A 0.178±0.00 N/A 0.556±0.00 0.552±0.28

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000760 CIL_000760_0002 CGP 17:58999618-62881317
CIL_0008LI CIL_0008LI_0002 VISTA 17:62400976-63001852
CIL_0008LC CIL_0008LC_0002 VISTA 17:62485705-63087128
CIL_0004Z5 CIL_0004Z5_0002 CGP 17:62604184-63500017

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005886 IDA plasma membrane
GO:0007411 IMP axon guidance
GO:0022407 IDA regulation of cell-cell adhesion
GO:0031290 IDA retinal ganglion cell axon guidance
GO:0031362 ISS anchored component of external side of plasma membrane
GO:0032314 IDA regulation of Rac GTPase activity
GO:0032319 ISS regulation of Rho GTPase activity
GO:0032956 IDA regulation of actin cytoskeleton organization
GO:0045499 IDA chemorepellent activity
GO:0046658 IBA anchored component of plasma membrane
GO:0046875 IPI ephrin receptor binding
GO:0048013 IDA ephrin receptor signaling pathway
GO:0050731 IDA positive regulation of peptidyl-tyrosine phosphorylation
GO:0050919 IDA negative chemotaxis
GO:0051893 ISS regulation of focal adhesion assembly
GO:0061178 IMP regulation of insulin secretion involved in cellular response to glucose stimulus
GO:0070507 ISS regulation of microtubule cytoskeleton organization

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000057223 efna5b ephrin A5b protein_coding Danio_rerio
ENSDARG00000089790 efna5a ephrin A5a protein_coding Danio_rerio
ENSG00000184349 EFNA5 ephrin-A5 protein_coding Homo_sapiens

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