C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: plakophilin 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000184363 PKP3 9606 + 11:392614-404908 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000331563 PKP3-001 394217-404908 protein_coding
  ENST00000524646 PKP3-008 397372-397776 retained_intron
  ENST00000525642 PKP3-010 404087-404681 protein_coding
  ENST00000526971 PKP3-009 397630-400260 retained_intron
  ENST00000527442 PKP3-004 393463-397329 protein_coding
  ENST00000528036 PKP3-005 394145-397438 protein_coding
  ENST00000530695 PKP3-011 396151-396985 processed_transcript
  ENST00000531857 PKP3-006 394243-397312 protein_coding
  ENST00000533069 PKP3-007 394243-396915 retained_intron
  ENST00000533249 PKP3-003 393449-397655 protein_coding
  ENST00000534401 PKP3-002 392614-397198 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonLiverLungMuscleOvaryPlacentaENST00000331563ENST00000525642ENST00000526971ENST00000531857
Transcript ID Adipose Brain Breast Colon Liver Lung Muscle Ovary Placenta
ENST00000331563 N/A N/A 2.192±0.94 N/A 0.136±0.00 3.277±0.00 0.122±0.00 11.462±6.98 27.197±7.56
ENST00000525642 0.752±0.00 N/A N/A 2.595±0.00 N/A N/A N/A N/A N/A
ENST00000526971 N/A 0.842±0.00 2.675±0.00 3.746±0.00 0.201±0.00 4.712±0.00 N/A N/A N/A
ENST00000531857 N/A N/A N/A N/A 1.131±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002UH CIL_0002UH_0001 CGP 11:369796-404908
CIL_0002AQ CIL_0002AQ_0001 CGP 11:392614-417455

Gene Ontology
GO IDEvidence TypeGO Description
GO:0002159 IMP desmosome assembly
GO:0005488 IEA binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005886 IDA plasma membrane
GO:0005911 TAS cell-cell junction
GO:0016337 IEA single organismal cell-cell adhesion
GO:0030057 IEA desmosome
GO:0050839 IPI cell adhesion molecule binding
GO:0090002 IMP establishment of protein localization to plasma membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000051861 pkp3a plakophilin 3a protein_coding Danio_rerio
ENSDARG00000079438 PKP3 (2 of 2) plakophilin 3 protein_coding Danio_rerio
ENSMUSG00000054065 Pkp3 plakophilin 3 protein_coding Mus_musculus

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