C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: plakophilin 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000331563 PKP3-001 ENSG00000184363 9606 + 11:394217-404908 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastLiverLungMuscleOvaryPlacentaENST00000331563
Transcript ID Breast Liver Lung Muscle Ovary Placenta
ENST00000331563 2.192±0.94 0.136±0.00 3.277±0.00 0.122±0.00 11.462±6.98 27.197±7.56

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002UH CIL_0002UH_0001 CGP 11:369796-404908
CIL_0002AQ CIL_0002AQ_0001 CGP 11:392614-417455

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002159 IMP desmosome assembly
GO:0005488 IEA binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005886 IDA plasma membrane
GO:0005911 TAS cell-cell junction
GO:0016337 IEA single organismal cell-cell adhesion
GO:0030057 IEA desmosome
GO:0050839 IPI cell adhesion molecule binding
GO:0090002 IMP establishment of protein localization to plasma membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000066873 Pkp3-001 protein_coding Mus_musculus 0 2693
ENSMUST00000106039 Pkp3-002 protein_coding Mus_musculus 0 2641
ENSMUST00000160403 Pkp3-003 retained_intron Mus_musculus 0 1134
ENSMUST00000163041 Pkp3-006 protein_coding Mus_musculus 0 793
ENSMUST00000159375 Pkp3-004 protein_coding Mus_musculus 0 350
ENSMUST00000159253 Pkp3-010 retained_intron Mus_musculus 0 329
ENSMUST00000160615 Pkp3-009 retained_intron Mus_musculus 0 300
ENSMUST00000160869 Pkp3-008 nonsense_mediated_decay Mus_musculus 0 254

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