C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: plakophilin 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000054065 Pkp3 10090 + 7:141078218-141090510 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000066873 Pkp3-001 141079760-141090510 protein_coding
  ENSMUST00000106039 Pkp3-002 141078218-141090510 protein_coding
  ENSMUST00000159253 Pkp3-010 141088208-141088848 retained_intron
  ENSMUST00000159375 Pkp3-004 141079147-141082646 protein_coding
  ENSMUST00000160356 Pkp3-005 141089861-141090509 protein_coding
  ENSMUST00000160403 Pkp3-003 141088146-141090507 retained_intron
  ENSMUST00000160615 Pkp3-009 141087761-141088877 retained_intron
  ENSMUST00000160869 Pkp3-008 141079780-141082695 nonsense_mediated_decay
  ENSMUST00000161142 Pkp3-007 141089411-141089916 retained_intron
  ENSMUST00000163041 Pkp3-006 141079775-141083121 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000066873ENSMUST00000106039ENSMUST00000159253ENSMUST00000160356ENSMUST00000160403ENSMUST00000160615ENSMUST00000161142ENSMUST00000163041
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000066873 3.858±0.25 0.032±0.00 7.979±1.96 0.196±0.13 7.863±3.37 41.143±4.35 0.083±0.00 5.247±2.12 0.240±0.13 9.426±1.92 0.171±0.00 2.713±1.53 11.493±10.52
ENSMUST00000106039 N/A N/A N/A 0.196±0.08 N/A N/A N/A N/A 0.096±0.00 2.753±0.41 0.181±0.04 N/A 1.674±0.00
ENSMUST00000159253 N/A 0.524±0.00 N/A N/A N/A N/A 0.237±0.00 N/A N/A N/A N/A N/A N/A
ENSMUST00000160356 N/A N/A N/A N/A 7.386±0.00 N/A N/A N/A N/A N/A 0.214±0.00 1.522±0.01 75.004±0.00
ENSMUST00000160403 0.434±0.00 0.272±0.04 N/A 0.068±0.00 5.084±2.21 N/A 0.292±0.23 N/A 0.346±0.08 N/A 0.426±0.55 0.687±0.14 7.124±1.59
ENSMUST00000160615 0.619±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.175±0.03 N/A N/A
ENSMUST00000161142 N/A N/A N/A N/A N/A N/A 0.463±0.22 N/A 0.378±0.00 N/A 0.141±0.04 N/A N/A
ENSMUST00000163041 N/A 0.202±0.09 N/A N/A N/A 20.789±0.00 N/A N/A N/A N/A N/A 2.073±0.26 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002UH CIL_0002UH_0002 CGP 7:141061274-141090510
CIL_0002AQ CIL_0002AQ_0002 CGP 7:141078218-141100546

Gene Ontology
GO IDEvidence TypeGO Description
GO:0002159 IEA desmosome assembly
GO:0005515 IPI protein binding
GO:0005634 ISS nucleus
GO:0005886 IEA plasma membrane
GO:0005914 ISS spot adherens junction
GO:0016337 IEA single organismal cell-cell adhesion
GO:0030057 IDA desmosome
GO:0050839 IEA cell adhesion molecule binding
GO:0090002 IEA establishment of protein localization to plasma membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000051861 pkp3a plakophilin 3a protein_coding Danio_rerio
ENSDARG00000079438 PKP3 (2 of 2) plakophilin 3 protein_coding Danio_rerio
ENSG00000184363 PKP3 plakophilin 3 protein_coding Homo_sapiens

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