C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: transmembrane emp24 protein transport domain containing 9
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000184840 TMED9 9606 + 5:177592158-177596124 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000332598 TMED9-001 177592158-177596124 protein_coding
  ENST00000505521 TMED9-003 177592217-177594115 retained_intron
  ENST00000507578 TMED9-005 177592650-177594195 processed_transcript
  ENST00000507723 TMED9-002 177592272-177595420 retained_intron
  ENST00000510499 TMED9-006 177593222-177595386 retained_intron
  ENST00000513799 TMED9-004 177592488-177595577 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000332598ENST00000505521ENST00000513799
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000332598 52.581±0.00 68.788±0.00 10.462±0.00 16.323±6.24 30.384±10.17 30.631±11.24 16.208±10.69 52.650±37.00 78.903±72.17 54.494±44.43 16.085±9.79 51.395±29.99 197.331±30.61 42.425±4.99
ENST00000505521 N/A N/A N/A 3.225±0.00 N/A N/A 2.879±0.00 N/A N/A N/A 6.373±0.00 N/A N/A N/A
ENST00000513799 23.676±0.00 25.098±0.00 N/A N/A 24.368±0.00 16.002±0.00 N/A 30.533±0.00 N/A N/A N/A N/A N/A 19.691±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008A2 CIL_0008A2_0001 VISTA 5:177089375-177692188
CIL_0002YQ CIL_0002YQ_0001 CGP 5:177519788-177596124
CIL_000387 CIL_000387_0001 CGP 5:177592158-177610347

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000139 IMP Golgi membrane
GO:0005515 IPI protein binding
GO:0005783 IDA endoplasmic reticulum
GO:0005793 IDA endoplasmic reticulum-Golgi intermediate compartment
GO:0005794 IDA Golgi apparatus
GO:0006810 IEA transport
GO:0007030 IMP Golgi organization
GO:0010638 IMP positive regulation of organelle organization
GO:0016021 IEA integral component of membrane
GO:0019905 IPI syntaxin binding
GO:0030140 TAS trans-Golgi network transport vesicle
GO:0048205 IMP COPI coating of Golgi vesicle
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000004261 tmed9 transmembrane emp24 protein transport domain containing 9 protein_coding Danio_rerio
ENSMUSG00000058569 Tmed9 transmembrane emp24 protein transport domain containing 9 protein_coding Mus_musculus

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