C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transmembrane emp24 protein transport domain containing 9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000332598 TMED9-001 ENSG00000184840 9606 + 5:177592158-177596124 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000332598
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000332598 52.581±0.00 68.788±0.00 10.462±0.00 16.323±6.24 30.384±10.17 30.631±11.24 16.208±10.69 52.650±37.00 78.903±72.17 54.494±44.43 16.085±9.79 51.395±29.99 197.331±30.61 42.425±4.99

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008A2 CIL_0008A2_0001 VISTA 5:177089375-177692188
CIL_0002YQ CIL_0002YQ_0001 CGP 5:177519788-177596124
CIL_000387 CIL_000387_0001 CGP 5:177592158-177610347

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000139 IMP Golgi membrane
GO:0005515 IPI protein binding
GO:0005783 IDA endoplasmic reticulum
GO:0005793 IDA endoplasmic reticulum-Golgi intermediate compartment
GO:0005794 IDA Golgi apparatus
GO:0006810 IEA transport
GO:0007030 IMP Golgi organization
GO:0010638 IMP positive regulation of organelle organization
GO:0016021 IEA integral component of membrane
GO:0019905 IPI syntaxin binding
GO:0030140 TAS trans-Golgi network transport vesicle
GO:0048205 IMP COPI coating of Golgi vesicle
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000109905 Tmed9-201 protein_coding Mus_musculus 0 878
ENSMUST00000119445 Gm13444-001 processed_pseudogene Mus_musculus 0 508
ENSDART00000144609 tmed4-001 protein_coding Danio_rerio 0 324
ENSDART00000129801 tmed4-002 processed_transcript Danio_rerio 0 300

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