C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S27-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000411926 RPS27L-004 ENSG00000185088 9606 - 15:63153859-63158021 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000411926
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000411926 40.644±0.00 45.856±0.00 15.020±0.00 37.231±0.00 84.595±0.00 84.700±0.00 61.684±0.00 30.934±20.36 66.262±0.00 28.723±26.02 53.115±29.93 34.848±19.88 46.601±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00094O CIL_00094O_0001 VISTA 15:62748846-63351985
CIL_00098V CIL_00098V_0001 VISTA 15:62790346-63394142

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003735 IEA structural constituent of ribosome
GO:0005622 IEA intracellular
GO:0005840 IEA ribosome
GO:0006412 IEA translation
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000143044 Rps27l-005 processed_transcript Mus_musculus 0 377
ENSMUST00000040917 Rps27l-001 protein_coding Mus_musculus 0 377
ENSMUST00000123931 Rps27l-006 retained_intron Mus_musculus 4e-24 115
ENSMUST00000127896 Rps27l-002 protein_coding Mus_musculus 4e-24 115
ENSMUST00000146573 Rps27l-004 protein_coding Mus_musculus 0.0000007 58
ENSMUST00000147394 Rps27l-003 nonsense_mediated_decay Mus_musculus 0.0000007 58

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