C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S27-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000330964 RPS27L-001 ENSG00000185088 9606 - 15:63148250-63157802 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverOvaryPlacentaTestisENST00000330964
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Ovary Placenta Testis
ENST00000330964 0.708±0.00 1.760±0.00 0.886±0.00 0.890±0.00 0.835±0.14 0.877±0.00 1.028±0.21 0.796±0.00 2.194±0.00 0.286±0.00 0.386±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00094O CIL_00094O_0001 VISTA 15:62748846-63351985
CIL_00098V CIL_00098V_0001 VISTA 15:62790346-63394142

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003735 IEA structural constituent of ribosome
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0005634 IDA nucleus
GO:0005840 IEA ribosome
GO:0006281 IMP DNA repair
GO:0006412 IEA:IDA translation
GO:0006919 IDA activation of cysteine-type endopeptidase activity involved in apoptotic process
GO:0006974 IDA cellular response to DNA damage stimulus
GO:0008494 IDA translation activator activity
GO:0008656 IDA cysteine-type endopeptidase activator activity involved in apoptotic process
GO:0031571 IMP mitotic G1 DNA damage checkpoint
GO:0042771 IDA intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator
GO:0044822 IDA poly(A) RNA binding
GO:0045727 IDA positive regulation of translation
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000040917 Rps27l-001 protein_coding Mus_musculus 0 385
ENSMUST00000143044 Rps27l-005 processed_transcript Mus_musculus 0 381
ENSMUST00000127896 Rps27l-002 protein_coding Mus_musculus 1e-23 117
ENSMUST00000123931 Rps27l-006 retained_intron Mus_musculus 5e-23 115
ENSMUST00000146573 Rps27l-004 protein_coding Mus_musculus 0.000009 58
ENSMUST00000147394 Rps27l-003 nonsense_mediated_decay Mus_musculus 0.000009 58
ENSMUST00000116286 Stk40-201 protein_coding Mus_musculus 0.0001 55
ENSMUST00000127092 Stk40-002 processed_transcript Mus_musculus 0.0001 55

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