C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SET and MYND domain containing 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000185420 SMYD3 9606 - 1:245749342-246507312 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000366516 SMYD3-003 245749342-245930823 retained_intron
  ENST00000366517 SMYD3-002 245749342-245956102 processed_transcript
  ENST00000391836 SMYD3-013 245858562-246193727 protein_coding
  ENST00000403792 SMYD3-012 246325813-246507312 protein_coding
  ENST00000453676 SMYD3-014 245929898-246355335 protein_coding
  ENST00000455277 SMYD3-015 246327333-246483765 protein_coding
  ENST00000462422 SMYD3-007 246052557-246507144 processed_transcript
  ENST00000464398 SMYD3-006 245863809-246096423 processed_transcript
  ENST00000470510 SMYD3-009 245749351-245929937 processed_transcript
  ENST00000470863 SMYD3-004 246326764-246507232 processed_transcript
  ENST00000482592 SMYD3-011 245749342-245788942 processed_transcript
  ENST00000483072 SMYD3-017 245749351-245858647 processed_transcript
  ENST00000488153 SMYD3-016 245814342-245988538 processed_transcript
  ENST00000490107 SMYD3-001 245749342-246507257 protein_coding
  ENST00000490322 SMYD3-010 245749367-245814411 processed_transcript
  ENST00000492487 SMYD3-005 245858498-246306009 processed_transcript
  ENST00000493441 SMYD3-008 245764041-245988562 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000391836ENST00000453676ENST00000462422ENST00000464398ENST00000470510ENST00000470863ENST00000482592ENST00000483072ENST00000490107ENST00000492487ENST00000493441
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000391836 N/A N/A 1.243±0.00 N/A N/A 3.700±0.00 N/A N/A 2.989±0.00 N/A N/A N/A N/A N/A
ENST00000453676 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.069±0.00 N/A N/A N/A
ENST00000462422 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.176±0.00 N/A N/A N/A
ENST00000464398 N/A N/A N/A N/A N/A N/A 1.771±0.00 1.811±0.00 N/A 14.025±0.00 N/A 6.143±0.00 N/A N/A
ENST00000470510 N/A 3.010±0.00 N/A N/A N/A N/A N/A N/A N/A 1.543±0.00 N/A 2.906±0.00 1.184±0.00 3.400±0.00
ENST00000470863 N/A N/A 0.447±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482592 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.672±0.00 N/A
ENST00000483072 N/A N/A 1.420±0.00 N/A N/A N/A N/A 2.742±0.00 N/A N/A N/A N/A N/A 4.107±0.00
ENST00000490107 2.874±0.00 5.088±0.00 0.817±0.00 7.092±4.27 3.457±0.00 7.223±0.00 2.002±0.00 4.389±0.00 2.050±0.00 3.033±1.15 2.752±0.00 5.157±3.40 2.272±0.62 4.794±2.11
ENST00000492487 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.739±0.00 3.264±0.00 N/A N/A
ENST00000493441 N/A N/A 0.729±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.255±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000KU CIL_0000KU_0002 CGP 1:245154985-246507312
CIL_0007AO CIL_0007AO_0002 CGP 1:245749342-246566324

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000979 IEA RNA polymerase II core promoter sequence-specific DNA binding
GO:0000993 IEA RNA polymerase II core binding
GO:0001162 IEA RNA polymerase II intronic transcription regulatory region sequence-specific DNA binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006334 IEA nucleosome assembly
GO:0006469 IEA negative regulation of protein kinase activity
GO:0014904 IEA myotube cell development
GO:0018024 ISS histone-lysine N-methyltransferase activity
GO:0033138 IEA positive regulation of peptidyl-serine phosphorylation
GO:0034968 IEA histone lysine methylation
GO:0045184 IEA establishment of protein localization
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0046872 IEA metal ion binding
GO:0071549 IEA cellular response to dexamethasone stimulus

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000058050 smyd3 SET and MYND domain containing 3 protein_coding Danio_rerio
ENSMUSG00000055067 Smyd3 SET and MYND domain containing 3 protein_coding Mus_musculus

Loading