C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SET and MYND domain containing 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000055067 Smyd3 10090 - 1:178951960-179518041 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000068437 Smyd3-002 178955046-179248840 processed_transcript
  ENSMUST00000111134 Smyd3-004 179395224-179518041 protein_coding
  ENSMUST00000125756 Smyd3-005 179377535-179405419 processed_transcript
  ENSMUST00000128302 Smyd3-001 178951960-179518034 protein_coding
  ENSMUST00000129393 Smyd3-006 178957250-178989345 processed_transcript
  ENSMUST00000131684 Smyd3-003 178955151-179374103 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000068437ENSMUST00000111134ENSMUST00000128302ENSMUST00000129393ENSMUST00000131684
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000068437 0.387±0.00 0.727±0.25 N/A N/A 0.738±0.33 1.223±0.61 0.333±0.14 0.920±0.15 0.632±0.19 0.608±0.00 N/A 1.387±0.68 N/A 0.239±0.00
ENSMUST00000111134 2.361±1.56 0.558±0.04 3.360±0.00 2.746±0.46 1.924±0.97 2.153±0.44 1.053±0.22 2.605±0.22 1.826±1.22 N/A 0.778±0.22 2.446±1.10 1.736±1.08 0.779±0.51
ENSMUST00000128302 0.515±0.12 0.537±0.10 0.846±0.24 1.211±0.64 0.516±0.13 0.525±0.22 0.203±0.05 0.558±0.11 0.180±0.07 0.722±0.18 0.499±0.09 0.717±0.22 0.114±0.06 0.219±0.11
ENSMUST00000129393 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.389±0.00 N/A
ENSMUST00000131684 1.066±0.56 0.842±0.00 1.509±0.03 2.529±0.84 0.968±0.23 1.153±0.41 0.852±0.24 1.144±0.37 0.820±0.25 2.077±0.66 0.534±0.16 1.512±0.82 0.486±0.30 0.615±0.29

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000KU CIL_0000KU_0003 CGP 1:178529125-179518041
CIL_0007AO CIL_0007AO_0003 CGP 1:178951960-179546267

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000979 IDA RNA polymerase II core promoter sequence-specific DNA binding
GO:0000993 IDA RNA polymerase II core binding
GO:0001162 IDA RNA polymerase II intronic transcription regulatory region sequence-specific DNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0006334 IMP nucleosome assembly
GO:0006469 IMP negative regulation of protein kinase activity
GO:0014904 IMP myotube cell development
GO:0018024 IDA histone-lysine N-methyltransferase activity
GO:0033138 IMP positive regulation of peptidyl-serine phosphorylation
GO:0034968 IEA histone lysine methylation
GO:0045184 IMP establishment of protein localization
GO:0045944 IMP positive regulation of transcription from RNA polymerase II promoter
GO:0046872 IEA metal ion binding
GO:0071549 IDA cellular response to dexamethasone stimulus

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000058050 smyd3 SET and MYND domain containing 3 protein_coding Danio_rerio
ENSG00000185420 SMYD3 SET and MYND domain containing 3 protein_coding Homo_sapiens

Loading