C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SET and MYND domain containing 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000490107 SMYD3-001 ENSG00000185420 9606 - 1:245749342-246507257 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000490107
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000490107 2.874±0.00 5.088±0.00 0.817±0.00 7.092±4.27 3.457±0.00 7.223±0.00 2.002±0.00 4.389±0.00 2.050±0.00 3.033±1.15 2.752±0.00 5.157±3.40 2.272±0.62 4.794±2.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000KU CIL_0000KU_0002 CGP 1:245154985-246507312
CIL_0007AO CIL_0007AO_0002 CGP 1:245749342-246566324

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000979 IEA RNA polymerase II core promoter sequence-specific DNA binding
GO:0000993 IEA RNA polymerase II core binding
GO:0001162 IEA RNA polymerase II intronic transcription regulatory region sequence-specific DNA binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006334 IEA nucleosome assembly
GO:0006469 IEA negative regulation of protein kinase activity
GO:0014904 IEA myotube cell development
GO:0018024 ISS histone-lysine N-methyltransferase activity
GO:0033138 IEA positive regulation of peptidyl-serine phosphorylation
GO:0034968 IEA histone lysine methylation
GO:0045184 IEA establishment of protein localization
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0046872 IEA metal ion binding
GO:0071549 IEA cellular response to dexamethasone stimulus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000128302 Smyd3-001 protein_coding Mus_musculus 0 1496
ENSMUST00000068437 Smyd3-002 processed_transcript Mus_musculus 0 902
ENSMUST00000131684 Smyd3-003 processed_transcript Mus_musculus 0 898
ENSMUST00000125756 Smyd3-005 processed_transcript Mus_musculus 2.94273e-44 183

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