C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007AO_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000058050-ENSDARG00000074756 CGP 7955 17:11592197-11936767
GeneTranscriptPositionBiotype
ENSDARG00000058050 (smyd3)
SET and MYND domain containing 3 		ENSDART00000080847 (smyd3-201) 11592197-11921583 protein_coding
ENSDART00000105236 (smyd3-001) 11592332-11921583 protein_coding
ENSDARG00000074756 (tfb2m)
transcription factor B2, mitochondrial 		ENSDART00000110058 (tfb2m-201) 11921921-11936767 protein_coding
ENSDART00000150209 (tfb2m-001) 11921921-11936767 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0007AO_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000185420-ENSG00000162851 CGP 9606 1:245749342-246566324
GeneTranscriptPositionBiotype
ENSG00000162851 (TFB2M)
transcription factor B2, mitochondrial 		ENST00000366514 (TFB2M-001) 246540560-246566324 protein_coding
ENSG00000202184 (RNU6-1283P)
RNA, U6 small nuclear 1283, pseudogene 		ENST00000365314 (RNU6-1283P-201) 246189014-246189118 snRNA
ENSG00000225222 (CHCHD4P5)
coiled-coil-helix-coiled-coil-helix domain containing 4 pseudogene 5 		ENST00000436684 (CHCHD4P5-001) 246178778-246179204 processed_pseudogene
ENSG00000226876 (RP11-36N20.1)
 ENST00000443763 (RP11-36N20.1-001) 246108626-246113866 antisense
ENSG00000227728 (RP11-690C23.4)
 ENST00000398739 (RP11-690C23.4-001) 246509038-246522592 unprocessed_pseudogene
ENSG00000230184 (SMYD3-IT1)
SMYD3 intronic transcript 1 (non-protein coding) 		ENST00000426929 (SMYD3-IT1-001) 246321663-246322438 sense_intronic
ENSG00000235096 (RP11-83A16.1)
 ENST00000426386 (RP11-83A16.1-001) 246025897-246035603 antisense
ENSG00000242042 (RP11-690C23.2)
 ENST00000366308 (RP11-690C23.2-001) 246516039-246524287 lincRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0007AO_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000055067-ENSMUSG00000026492 CGP 10090 1:178951960-179546267
GeneTranscriptPositionBiotype
ENSMUSG00000026492 (Tfb2m)
transcription factor B2, mitochondrial 		ENSMUST00000027769 (Tfb2m-001) 179528055-179546267 protein_coding
ENSMUST00000129009 (Tfb2m-005) 179533655-179545892 processed_transcript
ENSMUST00000129982 (Tfb2m-003) 179531328-179546217 processed_transcript
ENSMUST00000139993 (Tfb2m-002) 179529293-179533697 processed_transcript
ENSMUST00000150778 (Tfb2m-004) 179528932-179533667 processed_transcript
ENSMUSG00000055067 (Smyd3)
SET and MYND domain containing 3 		ENSMUST00000068437 (Smyd3-002) 178955046-179248840 processed_transcript
ENSMUST00000111134 (Smyd3-004) 179395224-179518041 protein_coding
ENSMUST00000125756 (Smyd3-005) 179377535-179405419 processed_transcript
ENSMUST00000128302 (Smyd3-001) 178951960-179518034 protein_coding
ENSMUST00000129393 (Smyd3-006) 178957250-178989345 processed_transcript
ENSMUST00000131684 (Smyd3-003) 178955151-179374103 processed_transcript
ENSMUSG00000082395 (Gm15480)
predicted gene 15480 		ENSMUST00000120442 (Gm15480-001) 179538417-179538935 processed_pseudogene
ENSMUSG00000096474 (Gm5561)
predicted gene 5561 		ENSMUST00000178932 (Gm5561-201) 179520375-179520857 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

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Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007AO_0001ENSDARG00000058050ENSDART00000080847ENSDART00000105236ENSDARG00000074756ENSDART00000110058ENSDART00000150209CIL_0007AO_0002ENSG00000162851ENST00000366514ENSG00000202184ENST00000365314ENSG00000225222ENST00000436684ENSG00000226876ENST00000443763ENSG00000227728ENST00000398739ENSG00000230184ENST00000426929ENSG00000235096ENST00000426386ENSG00000242042ENST00000366308CIL_0007AO_0003ENSMUSG00000026492ENSMUST00000027769ENSMUST00000129009ENSMUST00000129982ENSMUST00000139993ENSMUST00000150778ENSMUSG00000055067ENSMUST00000068437ENSMUST00000111134ENSMUST00000125756ENSMUST00000128302ENSMUST00000129393ENSMUST00000131684ENSMUSG00000082395ENSMUST00000120442ENSMUSG00000096474ENSMUST00000178932
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007AO_0001ENSDARG00000058050ENSDART00000080847ENSDART00000105236ENSDARG00000074756ENSDART00000110058ENSDART00000150209CIL_0007AO_0002ENSG00000162851ENST00000366514ENSG00000202184ENST00000365314ENSG00000225222ENST00000436684ENSG00000226876ENST00000443763ENSG00000227728ENST00000398739ENSG00000230184ENST00000426929ENSG00000235096ENST00000426386ENSG00000242042ENST00000366308CIL_0007AO_0003ENSMUSG00000026492ENSMUST00000027769ENSMUST00000129982ENSMUSG00000055067ENSMUST00000068437ENSMUST00000111134ENSMUST00000128302ENSMUST00000129393ENSMUST00000131684ENSMUSG00000082395ENSMUST00000120442ENSMUSG00000096474ENSMUST00000178932
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000058050 ENSDART00000080847 N/A N/A N/A 0.238±0.09 N/A N/A 0.516±0.00 4.596±0.71 N/A N/A N/A N/A N/A N/A
ENSDART00000105236 N/A N/A N/A 2.703±0.29 N/A N/A 1.810±0.83 1.980±0.00 0.467±0.00 N/A 0.911±0.00 N/A N/A N/A
ENSDARG00000074756 ENSDART00000110058 N/A N/A N/A 6.061±0.00 N/A N/A 11.507±6.65 1.905±0.00 1.083±0.00 N/A 2.124±0.00 N/A N/A N/A
ENSDART00000150209 N/A N/A N/A 7.314±2.80 N/A N/A 16.232±1.66 6.695±0.00 6.536±0.00 N/A 14.654±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000162851 ENST00000366514 1.908±0.00 3.538±0.00 1.397±0.00 2.081±0.29 4.464±0.00 2.478±0.25 2.437±2.26 4.717±0.91 5.758±4.03 1.694±0.38 2.982±0.94 3.308±0.90 3.264±0.49 4.847±0.00
ENSG00000202184 ENST00000365314 N/A N/A N/A N/A N/A N/A 0.680±0.00 N/A N/A N/A N/A N/A N/A 0.317±0.00
ENSG00000225222 ENST00000436684 N/A 0.033±0.00 N/A N/A 0.960±0.00 0.465±0.43 0.217±0.12 1.605±0.00 1.166±0.00 0.097±0.00 N/A 0.051±0.00 N/A 0.049±0.00
ENSG00000226876 ENST00000443763 N/A N/A N/A 0.048±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.125±0.00
ENSG00000227728 ENST00000398739 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.028±0.00
ENSG00000230184 ENST00000426929 0.047±0.00 0.143±0.00 N/A 0.585±0.43 0.048±0.00 0.131±0.00 0.042±0.00 N/A N/A 0.081±0.00 N/A 0.184±0.00 N/A 0.044±0.00
ENSG00000235096 ENST00000426386 0.020±0.00 0.230±0.00 0.180±0.00 0.021±0.00 0.042±0.00 0.116±0.00 0.133±0.00 0.063±0.00 0.055±0.00 0.099±0.00 N/A 0.047±0.00 N/A 0.178±0.14
ENSG00000242042 ENST00000366308 0.168±0.00 0.220±0.00 N/A 0.139±0.00 0.096±0.00 0.104±0.00 0.017±0.00 0.112±0.00 0.033±0.00 N/A N/A 0.095±0.00 N/A 0.762±0.48
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000026492 ENSMUST00000027769 6.264±1.76 4.248±1.87 11.090±0.62 5.493±2.80 4.512±2.54 5.388±2.01 6.280±2.12 8.321±1.65 4.916±1.41 4.823±1.74 10.875±0.51 4.804±2.13 4.502±2.25 1.767±0.79
ENSMUST00000129009 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000129982 3.206±0.82 4.991±1.97 N/A 6.037±0.00 3.195±0.00 2.306±0.22 3.553±0.00 4.573±1.39 3.301±0.89 2.822±0.00 N/A 4.773±1.88 7.214±1.41 1.441±0.63
ENSMUST00000139993 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150778 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000055067 ENSMUST00000068437 0.387±0.00 0.727±0.25 N/A N/A 0.738±0.33 1.223±0.61 0.333±0.14 0.920±0.15 0.632±0.19 0.608±0.00 N/A 1.387±0.68 N/A 0.239±0.00
ENSMUST00000111134 2.361±1.56 0.558±0.04 3.360±0.00 2.746±0.46 1.924±0.97 2.153±0.44 1.053±0.22 2.605±0.22 1.826±1.22 N/A 0.778±0.22 2.446±1.10 1.736±1.08 0.779±0.51
ENSMUST00000125756 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000128302 0.515±0.12 0.537±0.10 0.846±0.24 1.211±0.64 0.516±0.13 0.525±0.22 0.203±0.05 0.558±0.11 0.180±0.07 0.722±0.18 0.499±0.09 0.717±0.22 0.114±0.06 0.219±0.11
ENSMUST00000129393 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.389±0.00 N/A
ENSMUST00000131684 1.066±0.56 0.842±0.00 1.509±0.03 2.529±0.84 0.968±0.23 1.153±0.41 0.852±0.24 1.144±0.37 0.820±0.25 2.077±0.66 0.534±0.16 1.512±0.82 0.486±0.30 0.615±0.29
ENSMUSG00000082395 ENSMUST00000120442 0.224±0.12 N/A 0.100±0.03 0.136±0.05 0.271±0.15 0.459±0.00 0.150±0.05 0.106±0.00 0.145±0.13 N/A 0.120±0.04 N/A 0.138±0.08 0.087±0.00
ENSMUSG00000096474 ENSMUST00000178932 0.107±0.00 N/A 0.118±0.02 0.088±0.01 0.371±0.18 0.180±0.01 0.247±0.00 0.360±0.00 0.129±0.06 N/A N/A 0.112±0.00 0.230±0.26 N/A

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