C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RNA-binding region (RNP1, RRM) containing 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000185946 RNPC3 9606 + 1:103525691-103555239 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000423855 RNPC3-008 103525971-103555239 protein_coding
  ENST00000524631 RNPC3-001 103525691-103553343 protein_coding
  ENST00000524641 RNPC3-006 103541361-103547035 protein_coding
  ENST00000525323 RNPC3-007 103546927-103551263 retained_intron
  ENST00000527062 RNPC3-005 103525757-103541475 protein_coding
  ENST00000531883 RNPC3-004 103525697-103535441 protein_coding
  ENST00000532117 RNPC3-009 103551724-103553714 nonsense_mediated_decay
  ENST00000533099 RNPC3-003 103525699-103555112 protein_coding
  ENST00000533834 RNPC3-002 103537388-103552778 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000423855ENST00000524631ENST00000527062ENST00000533099ENST00000533834
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000423855 2.069±0.00 N/A N/A 2.731±0.00 2.825±0.00 N/A 2.230±0.00 0.340±0.00 0.649±0.00 0.707±0.00 1.695±0.54 0.719±0.18 4.199±0.27
ENST00000524631 N/A 5.537±0.00 N/A N/A N/A N/A 2.036±0.00 N/A N/A 2.383±0.00 3.011±0.00 N/A N/A
ENST00000527062 N/A N/A 36.069±0.00 N/A 14.866±0.00 8.090±0.00 N/A 15.939±0.00 20.458±0.00 5.812±0.00 4.878±0.00 5.695±0.00 18.218±0.00
ENST00000533099 0.914±0.00 2.534±0.00 1.616±0.00 N/A 0.907±0.00 1.045±0.00 3.029±0.00 0.228±0.00 0.658±0.00 N/A 1.650±0.00 0.231±0.03 1.476±0.78
ENST00000533834 N/A 2.649±0.00 N/A N/A N/A N/A N/A N/A 2.759±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00072Z CIL_00072Z_0002 CGP 1:102876467-103555239

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding
GO:0005634 IDA nucleus
GO:0005689 IDA U12-type spliceosomal complex
GO:0006397 IEA mRNA processing
GO:0008380 IC RNA splicing

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000011247 rnpc3 RNA-binding region (RNP1, RRM) containing 3 protein_coding Danio_rerio
ENSMUSG00000027981 Rnpc3 RNA-binding region (RNP1, RRM) containing 3 protein_coding Mus_musculus

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