C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RNA-binding region (RNP1, RRM) containing 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027981 Rnpc3 10090 - 3:113605067-113630149 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000092154 Rnpc3-001 113605067-113630149 protein_coding
  ENSMUST00000106535 Rnpc3-002 113606336-113630149 protein_coding
  ENSMUST00000106536 Rnpc3-003 113605464-113630149 protein_coding
  ENSMUST00000123232 Rnpc3-006 113616553-113621965 processed_transcript
  ENSMUST00000127068 Rnpc3-004 113627078-113630079 retained_intron
  ENSMUST00000132220 Rnpc3-008 113611133-113615440 processed_transcript
  ENSMUST00000135712 Rnpc3-007 113616802-113621316 processed_transcript
  ENSMUST00000153853 Rnpc3-005 113605067-113629900 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000092154ENSMUST00000106535ENSMUST00000106536ENSMUST00000123232ENSMUST00000127068ENSMUST00000132220ENSMUST00000135712
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000092154 N/A N/A 3.413±0.38 4.754±2.45 N/A 0.907±0.24 0.658±0.00 1.146±0.00 3.614±1.36 N/A N/A 2.789±0.00 0.995±0.49 N/A
ENSMUST00000106535 N/A 4.397±1.88 2.863±0.72 9.853±5.51 N/A 1.149±0.37 1.414±0.26 1.548±0.48 2.268±0.17 3.129±0.89 N/A 3.455±1.07 1.413±0.15 2.480±0.60
ENSMUST00000106536 5.299±0.00 11.764±3.15 4.035±0.63 6.654±0.38 8.766±1.81 4.720±1.40 0.977±0.00 1.422±0.10 5.934±1.52 3.767±1.28 2.952±0.78 11.407±4.87 7.555±1.72 2.691±0.35
ENSMUST00000123232 N/A N/A N/A 35.366±0.00 N/A N/A N/A N/A N/A N/A N/A 41.103±0.00 25.219±10.99 18.947±0.00
ENSMUST00000127068 N/A 10.964±4.15 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000132220 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 16.777±0.00 N/A
ENSMUST00000135712 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 32.094±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005I9 CIL_0005I9_0005 CGP 3:113529403-113606699

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003674 ND molecular_function
GO:0003723 IEA RNA binding
GO:0005634 ISS nucleus
GO:0005689 ISS U12-type spliceosomal complex
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000011247 rnpc3 RNA-binding region (RNP1, RRM) containing 3 protein_coding Danio_rerio
ENSG00000185946 RNPC3 RNA-binding region (RNP1, RRM) containing 3 protein_coding Homo_sapiens

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