C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: keratin 5
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000186081 KRT5 9606 - 12:52514575-52520687 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000252242 KRT5-001 52514575-52520687 protein_coding
  ENST00000546577 KRT5-003 52519901-52520530 protein_coding
  ENST00000547890 KRT5-010 52516690-52517952 retained_intron
  ENST00000548409 KRT5-008 52515458-52517945 protein_coding
  ENST00000549420 KRT5-005 52517958-52520371 protein_coding
  ENST00000549511 KRT5-009 52515113-52517888 retained_intron
  ENST00000551013 KRT5-006 52517157-52519617 retained_intron
  ENST00000551188 KRT5-007 52517181-52519117 protein_coding
  ENST00000551275 KRT5-004 52519751-52520394 protein_coding
  ENST00000552629 KRT5-002 52516128-52520394 retained_intron
  ENST00000552952 KRT5-011 52514996-52516196 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000252242ENST00000546577ENST00000547890ENST00000549420ENST00000549511ENST00000551013ENST00000551275ENST00000552629
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000252242 1.402±0.00 0.010±0.00 N/A 0.390±0.00 3.362±0.00 0.034±0.02 N/A 0.637±0.00 0.421±0.00 N/A N/A 193.755±296.61 10.387±0.11 1.416±1.25
ENST00000546577 N/A 0.167±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000547890 N/A N/A N/A N/A N/A N/A 0.042±0.00 N/A N/A N/A 0.082±0.00 N/A N/A N/A
ENST00000549420 N/A N/A 0.285±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 501.020±0.00 22.139±0.00 0.274±0.00
ENST00000549511 N/A N/A N/A N/A N/A 0.054±0.00 0.260±0.00 N/A N/A N/A N/A 0.230±0.00 N/A N/A
ENST00000551013 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.925±0.00 N/A N/A N/A N/A
ENST00000551275 N/A N/A N/A N/A N/A N/A 0.135±0.03 N/A N/A 1.950±0.00 N/A 50.026±0.00 N/A N/A
ENST00000552629 N/A N/A 0.206±0.00 N/A 1.304±0.00 N/A N/A 0.357±0.00 0.712±0.00 N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00033Q CIL_00033Q_000N CGP 12:52487174-52520687
CIL_00033Q CIL_00033Q_000K CGP 12:52514575-52553147

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0005200 TAS structural constituent of cytoskeleton
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005739 IEA mitochondrion
GO:0005829 TAS cytosol
GO:0005882 IDA:IEA intermediate filament
GO:0005886 IEA plasma membrane
GO:0008544 TAS epidermis development
GO:0016020 IDA membrane
GO:0031581 TAS hemidesmosome assembly
GO:0034329 TAS cell junction assembly
GO:0045095 IDA keratin filament
GO:0070062 IDA extracellular vesicular exosome
GO:0097110 IPI scaffold protein binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000017624 krt4 keratin 4 protein_coding Danio_rerio
ENSDARG00000043242 si:dkey-222f2.1 si:dkey-222f2.1 protein_coding Danio_rerio
ENSDARG00000058358 krt8 keratin 8 protein_coding Danio_rerio
ENSDARG00000058371 krt5 keratin 5 protein_coding Danio_rerio
ENSDARG00000058462 zgc:158846 zgc:158846 protein_coding Danio_rerio
ENSMUSG00000061527 Krt5 keratin 5 protein_coding Mus_musculus

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