C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: keratin 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000549420 KRT5-005 ENSG00000186081 9606 - 12:52517958-52520371 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderOvaryPlacentaTestisENST00000549420
Transcript ID Bladder Ovary Placenta Testis
ENST00000549420 0.285±0.00 501.020±0.00 22.139±0.00 0.274±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00033Q CIL_00033Q_000N CGP 12:52487174-52520687
CIL_00033Q CIL_00033Q_000K CGP 12:52514575-52553147

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0005882 IEA intermediate filament
GO:0045095 IEA keratin filament

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000023709 Krt5-001 protein_coding Mus_musculus 0 623
ENSMUST00000023788 Krt6a-201 protein_coding Mus_musculus 0 568
ENSMUST00000100184 Gm5478-201 protein_coding Mus_musculus 0 440
ENSMUST00000042957 Krt75-001 protein_coding Mus_musculus 0 409
ENSMUST00000062879 Gm5414-201 protein_coding Mus_musculus 0 344
ENSMUST00000023799 Krt79-001 protein_coding Mus_musculus 0 329
ENSMUST00000087996 Krt77-001 protein_coding Mus_musculus 0 239
ENSMUST00000068904 Krt7-001 protein_coding Mus_musculus 0 224
ENSMUST00000147662 Krt7-003 protein_coding Mus_musculus 0 219
ENSMUST00000023790 Krt1-201 protein_coding Mus_musculus 0 204
ENSMUST00000131069 Krt7-002 retained_intron Mus_musculus 6e-38 161

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