C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: keratin 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000252242 KRT5-001 ENSG00000186081 9606 - 12:52514575-52520687 protein_coding

Homo sapiens EnsemblGRCh38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLiverOvaryPlacentaTestisENST00000252242
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Liver Ovary Placenta Testis
ENST00000252242 1.402±0.00 0.010±0.00 0.390±0.00 3.362±0.00 0.034±0.02 0.637±0.00 0.421±0.00 193.755±296.61 10.387±0.11 1.416±1.25

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00033Q CIL_00033Q_000N CGP 12:52487174-52520687
CIL_00033Q CIL_00033Q_000K CGP 12:52514575-52553147

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0005200 TAS structural constituent of cytoskeleton
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005739 IEA mitochondrion
GO:0005829 TAS cytosol
GO:0005882 IDA:IEA intermediate filament
GO:0005886 IEA plasma membrane
GO:0008544 TAS epidermis development
GO:0016020 IDA membrane
GO:0031581 TAS hemidesmosome assembly
GO:0034329 TAS cell junction assembly
GO:0045095 IDA keratin filament
GO:0070062 IDA extracellular vesicular exosome
GO:0097110 IPI scaffold protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000023709 Krt5-001 protein_coding Mus_musculus 0 2010
ENSMUST00000023788 Krt6a-201 protein_coding Mus_musculus 0 1168
ENSMUST00000023786 Krt6b-201 protein_coding Mus_musculus 0 1134
ENSMUST00000042957 Krt75-001 protein_coding Mus_musculus 0 974
ENSMUST00000023714 4732456N10Rik-001 protein_coding Mus_musculus 0 913
ENSMUST00000062879 Gm5414-201 protein_coding Mus_musculus 0 763
ENSMUST00000063292 Krt73-001 protein_coding Mus_musculus 0 675
ENSMUST00000100179 Krt76-001 protein_coding Mus_musculus 0 647
ENSMUST00000100184 Gm5478-201 protein_coding Mus_musculus 0 617
ENSMUST00000023799 Krt79-001 protein_coding Mus_musculus 0 593
ENSMUST00000068904 Krt7-001 protein_coding Mus_musculus 0 582
ENSMUST00000087996 Krt77-001 protein_coding Mus_musculus 0 392
ENSMUST00000023790 Krt1-201 protein_coding Mus_musculus 0 353
ENSMUST00000088049 Krt86-201 protein_coding Mus_musculus 0 298
ENSMUST00000061185 Krt81-201 protein_coding Mus_musculus 0 292
ENSMUST00000147662 Krt7-003 protein_coding Mus_musculus 0 243
ENSMUST00000077196 Krt80-201 protein_coding Mus_musculus 3.00018e-42 178
ENSMUST00000131069 Krt7-002 retained_intron Mus_musculus 3e-37 161

Loading