C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: thrombospondin 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000186340 THBS2 9606 - 6:169215780-169254044 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000366787 THBS2-001 169215780-169254044 protein_coding
  ENST00000435791 THBS2-002 169248775-169252151 protein_coding
  ENST00000461848 THBS2-004 169234510-169237412 processed_transcript
  ENST00000472733 THBS2-003 169246065-169248680 processed_transcript
  ENST00000488355 THBS2-005 169217454-169223440 processed_transcript
  ENST00000617924 THBS2-201 169216192-169253832 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000366787ENST00000617924
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000366787 27.975±0.00 8.564±0.00 0.339±0.00 4.912±3.71 7.438±0.15 11.498±10.58 2.379±1.57 2.087±0.00 2.309±0.00 4.633±3.39 1.104±0.00 20.466±15.14 1.019±0.50 4.334±3.58
ENST00000617924 15.827±0.00 N/A 0.223±0.00 N/A 9.402±0.00 4.104±2.75 1.004±0.00 3.016±0.00 4.250±0.00 N/A 0.444±0.00 7.137±0.00 0.296±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004W0 CIL_0004W0_0001 CGP 6:168441151-169254044
CIL_0004W1 CIL_0004W1_0001 CGP 6:169215780-169702048

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005515 IPI:IEA protein binding
GO:0005576 TAS:IEA extracellular region
GO:0005604 IEA basement membrane
GO:0007155 IEA cell adhesion
GO:0008201 IEA heparin binding
GO:0016525 IDA negative regulation of angiogenesis
GO:0031012 IEA extracellular matrix
GO:0031091 IDA platelet alpha granule
GO:0051965 IEA positive regulation of synapse assembly

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000060410 thbs2a thrombospondin 2a protein_coding Danio_rerio
ENSDARG00000073810 thbs2b thrombospondin 2b protein_coding Danio_rerio
ENSDARG00000092466 thbs2a thrombospondin 2a protein_coding Danio_rerio
ENSMUSG00000023885 Thbs2 thrombospondin 2 protein_coding Mus_musculus

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